mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,253,086 | 0 | G | C | 41.3% | 79.7 / 147.4 | 109 | G24A (GGC→GCC) | ubiA | p‑hydroxybenzoate octaprenyltransferase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 39.0% | 77.2 / 102.0 | 95 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,025,673 | 0 | T | C | 34.6% | 105.4 / 95.7 | 102 | L229P (CTC→CCC) | ubiD | 3‑octaprenyl‑4‑hydroxybenzoate decarboxylase |
| * | NC_000913 | 4,606,239 | 0 | A | G | 28.0% | 32.1 / 12.9 | 25 | noncoding (48/87 nt) | leuP | tRNA‑Leu |
| Marginal new junction evidence (lowest skew 10 of 24 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 42 (0.440) | 15 (0.180) | 14/250 | 4.7 | 25.6% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 50 (0.590) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 46 (0.480) | 9 (0.110) | 9/250 | 6.1 | 16.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 53 (0.630) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 3781125 | 112 (1.180) | 6 (0.070) | 6/272 | 7.6 | 5.0% | intergenic (+108/‑90) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| ? | NC_000913 | = 3781138 | 122 (1.330) | intergenic (+121/‑77) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | 280953 = | 76 (0.800) | 6 (0.060) | 6/274 | 7.6 | 8.2% | coding (1031/1155 nt) | yagA | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | 280976 = | 60 (0.650) | coding (1008/1155 nt) | yagA | CP4‑6 prophage; putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913 | 3811200 = | 114 (1.200) | 7 (0.080) | 5/258 | 7.8 | 5.8% | intergenic (‑48/+50) | mutM/rpmG | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33 |
| ? | NC_000913 | 3811236 = | 124 (1.430) | intergenic (‑84/+14) | mutM/rpmG | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33 | |||||
| * | ? | NC_000913 | = 3701914 | 127 (1.340) | 5 (0.060) | 5/268 | 7.9 | 3.9% | coding (955/1005 nt) | dppF | dipeptide/heme ABC transporter ATPas |
| ? | NC_000913 | = 3701941 | 125 (1.380) | coding (928/1005 nt) | dppF | dipeptide/heme ABC transporter ATPas | |||||
| * | ? | NC_000913 | = 2788670 | 125 (1.310) | 4 (0.050) | 4/260 | 8.3 | 3.3% | intergenic (+21/‑315) | ygaQ/csiD | uncharacterized protein; putative enzyme/carbon starvation protein |
| ? | NC_000913 | = 2788676 | 119 (1.360) | intergenic (+27/‑309) | ygaQ/csiD | uncharacterized protein; putative enzyme/carbon starvation protein | |||||
| * | ? | NC_000913 | 4235570 = | 118 (1.240) | 4 (0.040) | 4/264 | 8.4 | 3.4% | intergenic (+163/‑336) | pgi/yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein |
| ? | NC_000913 | 4235593 = | 115 (1.290) | intergenic (+186/‑313) | pgi/yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein | |||||
| * | ? | NC_000913 | = 3372652 | 104 (1.090) | 4 (0.040) | 4/264 | 8.4 | 4.3% | intergenic (‑78/+31) | nanT/nanA | sialic acid transporter/N‑acetylneuraminate lyase |
| ? | NC_000913 | = 3372669 | 81 (0.910) | intergenic (‑95/+14) | nanT/nanA | sialic acid transporter/N‑acetylneuraminate lyase | |||||
| * | ? | NC_000913 | 2904902 = | 94 (0.990) | 4 (0.040) | 4/264 | 8.4 | 4.4% | coding (517/672 nt) | queE | 7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| ? | NC_000913 | 2904942 = | 86 (0.970) | coding (477/672 nt) | queE | 7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis | |||||