mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 23.5% | 57.2 / 16.0 | 34 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 41 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4341795 | 22 (0.560) | 6 (0.180) | 6/244 | 3.5 | 24.4% | intergenic (‑167/‑116) | melR/melA | melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding |
| ? | NC_000913 | = 4341815 | 18 (0.530) | intergenic (‑187/‑96) | melR/melA | melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding | |||||
| * | ? | NC_000913 | = 3830353 | 49 (1.250) | 6 (0.160) | 6/260 | 3.8 | 11.6% | intergenic (+17/‑104) | xanP/yicH | xanthine permease/putative inner membrane‑anchored periplasmic AsmA family protein |
| ? | NC_000913 | = 3830358 | 46 (1.260) | intergenic (+22/‑99) | xanP/yicH | xanthine permease/putative inner membrane‑anchored periplasmic AsmA family protein | |||||
| * | ? | NC_000913 | 453557 = | 37 (0.940) | 6 (0.160) | 6/266 | 3.8 | 14.3% | intergenic (‑12/+32) | ampG/yajG | muropeptide transporter/putative lipoprotein |
| ? | NC_000913 | 453577 = | 37 (0.990) | intergenic (‑32/+12) | ampG/yajG | muropeptide transporter/putative lipoprotein | |||||
| * | ? | NC_000913 | 905931 = | 34 (0.870) | 6 (0.160) | 6/268 | 3.9 | 15.9% | coding (823/1014 nt) | ybjS | putative NAD(P)H‑dependent oxidoreductase |
| ? | NC_000913 | = 912978 | 31 (0.830) | coding (837/1653 nt) | hcp | hybrid‑cluster [4Fe‑2S‑2O] subunit of anaerobic terminal reductases | |||||
| * | ? | NC_000913 | 3798221 = | 51 (1.300) | 6 (0.170) | 5/254 | 4.0 | 11.5% | intergenic (+14/+18) | waaL/waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| ? | NC_000913 | 3798249 = | 46 (1.290) | coding (1064/1074 nt) | waaU | lipopolysaccharide core biosynthesis | |||||
| * | ? | NC_000913 | 3802387 = | 24 (0.610) | 4 (0.130) | 4/228 | 4.1 | 17.2% | coding (672/1020 nt) | waaO | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑ alpha‑1,3‑D‑galactosyltransferase |
| ? | NC_000913 | 3802413 = | 19 (0.600) | coding (646/1020 nt) | waaO | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑ alpha‑1,3‑D‑galactosyltransferase | |||||
| * | ? | NC_000913 | = 3324951 | 44 (1.120) | 5 (0.140) | 5/260 | 4.1 | 10.9% | intergenic (‑40/+50) | folP/ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| ? | NC_000913 | = 3324959 | 41 (1.130) | intergenic (‑48/+42) | folP/ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo | |||||
| * | ? | NC_000913 | = 2068406 | 44 (1.120) | 5 (0.150) | 4/244 | 4.3 | 11.9% | pseudogene (14/159 nt) | yoeH | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related |
| ? | NC_000913 | = 2068411 | 36 (1.050) | pseudogene (9/159 nt) | yoeH | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 781813 = | 49 (1.250) | 4 (0.110) | 4/258 | 4.5 | 8.2% | intergenic (+161/‑272) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| ? | NC_000913 | 781840 = | 45 (1.250) | intergenic (+188/‑245) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A | |||||
| * | ? | NC_000913 | = 114505 | 57 (1.450) | 4 (0.110) | 4/256 | 4.5 | 7.0% | intergenic (+18/+17) | guaC/hofC | GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein |
| ? | NC_000913 | = 114511 | 55 (1.530) | intergenic (+24/+11) | guaC/hofC | GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein | |||||