| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,625,592 | Δ95,041 bp | IS150‑mediated | yhhJ–[mokA] | 82 genes yhhJ, rbbA, yhiI, yhiJ, yhiL, yhiL, yhiM, yhiN, pitA, uspB, uspA, dtpB, rsmJ, prlC, rlmJ, gor, dinQ, agrA, agrB, arsR, arsB, arsC, yhiS, insH1, yhiS, slp, dctR, yhiD, hdeB, hdeA, hdeD, arrS, gadE, mdtE, mdtF, gadW, gadY, gadX, gadA, yhjA, treF, yhjB, yhjC, yhjD, yhjE, yhjG, yhjH, kdgK, yhjJ, dctA, yhjK, bcsC, bcsZ, bcsB, bcsA, bcsQ, yhjR, bcsE, bcsF, bcsG, ldrD, rdlD, yhjV, dppF, dppD, dppC, dppB, dppA, proK, eptB, yhjX, yhjY, tag, yiaC, bisC, yiaD, ghrB, yiaF, yiaG, cspA, hokA, [mokA] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3625592 | 3720632 | 95041 | 28 [0] | [0] 28 | yhhJ–[mokA] | yhhJ,rbbA,yhiI,yhiJ,yhiL,yhiL,yhiM,yhiN,pitA,uspB,uspA,dtpB,rsmJ,prlC,rlmJ,gor,dinQ,agrA,agrB,arsR,arsB,arsC,yhiS,insH1,yhiS,slp,dctR,yhiD,hdeB,hdeA,hdeD,arrS,gadE,mdtE,mdtF,gadW,gadY,gadX,gadA,yhjA,treF,yhjB,yhjC,yhjD,yhjE,yhjG,yhjH,kdgK,yhjJ,dctA,yhjK,bcsC,bcsZ,bcsB,bcsA,bcsQ,yhjR,bcsE,bcsF,bcsG,ldrD,rdlD,yhjV,dppF,dppD,dppC,dppB,dppA,proK,eptB,yhjX,yhjY,tag,yiaC,bisC,yiaD,ghrB,yiaF,yiaG,cspA,hokA,[mokA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3625591 | 0 (0.000) | 28 (0.700) | 26/252 | 0.5 | 100% | noncoding (3/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 3720633 = | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
AGCAGCCATGGACAGAAACTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCG > NC_000913/3625457‑3625736 | agcagcCATGGACAGAAACTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccat < 4:91408‑M1/149‑15 (MQ=255) tGGACAGAAACTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttgg < 2:31896‑M1/149‑23 (MQ=255) aGAAACTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgat < 7:32581‑M1/149‑28 (MQ=255) cTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGACGGTTAACTGAAACTGTCCAGGTTTTGGGGGGCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaata < 5:188816‑M1/149‑49 (MQ=255) gCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatat < 2:55127‑M1/147‑50 (MQ=255) tttCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaata > 8:5675‑M1/1‑85 (MQ=255) gTAATCTTGCCCTGAATACATGACTGATTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtg < 6:180278‑M1/83‑3 (MQ=255) gTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtg < 6:3681‑M1/83‑3 (MQ=255) aTCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaataccctttt > 2:92873‑M1/1‑78 (MQ=255) tCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttgg < 8:43470‑M1/99‑23 (MQ=255) tCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttgg > 7:43470‑M1/1‑77 (MQ=255) gCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttg < 7:5675‑M1/145‑73 (MQ=255) ggACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagc > 8:79217‑M1/1‑61 (MQ=255) ggACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagc < 7:79217‑M1/118‑58 (MQ=255) aTCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgcc > 6:192933‑M1/1‑52 (MQ=255) aTCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgcc < 5:192933‑M1/133‑82 (MQ=255) aaaGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagccc < 2:114064‑M1/89‑43 (MQ=255) aaaGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagccc > 1:114064‑M1/1‑47 (MQ=255) ggTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgt > 5:66347‑M1/1‑41 (MQ=255) ggTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgt < 6:66347‑M1/132‑92 (MQ=255) tGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaaacactacttcacaactgatga > 6:1083‑M1/1‑34 (MQ=255) tCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttaca < 1:92873‑M1/149‑124 (MQ=255) ttttGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaa < 7:159649‑M1/51‑32 (MQ=255) ttttGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaa > 8:159649‑M1/1‑20 (MQ=255) ggggTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggatcatctcg > 2:32799‑M1/1‑15 (MQ=255) cATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggatcatctcggcacgtt > 6:57694‑M1/1‑5 (MQ=255) cATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggatcatctcggcacgtt < 5:57694‑M1/146‑142 (MQ=255) aTAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggatcatctcggcacgttttgg > 4:3605‑M1/1‑4 (MQ=255) | AGCAGCCATGGACAGAAACTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCG > NC_000913/3625457‑3625736 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |