Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,625,592 Δ95,041 bp IS150‑mediated yhhJ[mokA] 82 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3625592 3720632 95041 28 [0] [0] 28 yhhJ–[mokA] yhhJ,rbbA,yhiI,yhiJ,yhiL,yhiL,yhiM,yhiN,pitA,uspB,uspA,dtpB,rsmJ,prlC,rlmJ,gor,dinQ,agrA,agrB,arsR,arsB,arsC,yhiS,insH1,yhiS,slp,dctR,yhiD,hdeB,hdeA,hdeD,arrS,gadE,mdtE,mdtF,gadW,gadY,gadX,gadA,yhjA,treF,yhjB,yhjC,yhjD,yhjE,yhjG,yhjH,kdgK,yhjJ,dctA,yhjK,bcsC,bcsZ,bcsB,bcsA,bcsQ,yhjR,bcsE,bcsF,bcsG,ldrD,rdlD,yhjV,dppF,dppD,dppC,dppB,dppA,proK,eptB,yhjX,yhjY,tag,yiaC,bisC,yiaD,ghrB,yiaF,yiaG,cspA,hokA,[mokA]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 36255910 (0.000)28 (0.700) 26/252 0.5 100% noncoding (3/82 nt) RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 3720633 = NA (NA)noncoding (1/1443 nt) IS150 repeat region

GTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGG  >  NC_000913/3720498‑3720777
                                                                                                                                       |                                                                                                                                                
agcagccatggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCAt                                                                                                                                     <  4:91408‑M2/14‑1 (MQ=255)
        tggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTgg                                                                                                                             <  2:31896‑M2/22‑1 (MQ=255)
             agaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGAt                                                                                                                        <  7:32581‑M2/27‑1 (MQ=255)
                                  cttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagacggttaactgaaactgtccaggttttggggggcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAata                                                                                                   <  5:188816‑M2/48‑1 (MQ=255)
                                     gcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAatat                                                                                                  <  2:55127‑M2/49‑1 (MQ=255)
                                                  tttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATa                                                                                   >  8:5675‑M2/86‑149 (MQ=255)
                                                      gtaatcttgccctgaatacatgactgattatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTg                                                                                                                                                 <  6:180278‑M2/2‑1 (MQ=255)
                                                      gtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTg                                                                                                                                                 <  6:3681‑M2/2‑1 (MQ=255)
                                                         atcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtttt                                                                            >  2:92873‑M2/79‑149 (MQ=255)
                                                          tcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTgg                                                                                                                             <  8:43470‑M2/22‑1 (MQ=255)
                                                          tcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTgg                                                                                                                             >  7:43470‑M2/78‑99 (MQ=255)
                                                              gccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTg                                                                           <  7:5675‑M2/72‑1 (MQ=255)
                                                                          ggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGc                                                                                          >  8:79217‑M2/62‑118 (MQ=255)
                                                                          ggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGc                                                                                          <  7:79217‑M2/57‑1 (MQ=255)
                                                                                   atcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGcc                                                                  >  6:192933‑M2/53‑133 (MQ=255)
                                                                                   atcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGcc                                                                  <  5:192933‑M2/81‑1 (MQ=255)
                                                                                        aaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGccc                                                                                                         <  2:114064‑M2/42‑1 (MQ=255)
                                                                                        aaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGccc                                                                                                         >  1:114064‑M2/48‑89 (MQ=255)
                                                                                              ggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGt                                                        >  5:66347‑M2/42‑132 (MQ=255)
                                                                                              ggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGt                                                        <  6:66347‑M2/91‑1 (MQ=255)
                                                                                                     tgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAAACACTACTTCACAACtgatga                                >  6:1083‑M2/35‑149 (MQ=255)
                                                                                                             tccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACa                        <  1:92873‑M2/123‑1 (MQ=255)
                                                                                                                   ttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGaaa                                                                                                                    <  7:159649‑M2/31‑1 (MQ=255)
                                                                                                                   ttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGaaa                                                                                                                    >  8:159649‑M2/21‑51 (MQ=255)
                                                                                                                        ggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCg             >  2:32799‑M2/16‑149 (MQ=255)
                                                                                                                                  cataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGtt      >  6:57694‑M2/6‑146 (MQ=255)
                                                                                                                                  cataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGtt      <  5:57694‑M2/141‑1 (MQ=255)
                                                                                                                                   ataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTgg  >  4:3605‑M2/5‑149 (MQ=255)
                                                                                                                                       |                                                                                                                                                
GTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGG  >  NC_000913/3720498‑3720777

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: