Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,625,592 Δ95,041 bp IS150‑mediated yhhJ[mokA] 82 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3625592 3720632 95041 28 [0] [0] 28 yhhJ–[mokA] yhhJ,rbbA,yhiI,yhiJ,yhiL,yhiL,yhiM,yhiN,pitA,uspB,uspA,dtpB,rsmJ,prlC,rlmJ,gor,dinQ,agrA,agrB,arsR,arsB,arsC,yhiS,insH1,yhiS,slp,dctR,yhiD,hdeB,hdeA,hdeD,arrS,gadE,mdtE,mdtF,gadW,gadY,gadX,gadA,yhjA,treF,yhjB,yhjC,yhjD,yhjE,yhjG,yhjH,kdgK,yhjJ,dctA,yhjK,bcsC,bcsZ,bcsB,bcsA,bcsQ,yhjR,bcsE,bcsF,bcsG,ldrD,rdlD,yhjV,dppF,dppD,dppC,dppB,dppA,proK,eptB,yhjX,yhjY,tag,yiaC,bisC,yiaD,ghrB,yiaF,yiaG,cspA,hokA,[mokA]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 36255910 (0.000)28 (0.700) 26/252 0.5 100% noncoding (3/82 nt) RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 3720633 = NA (NA)noncoding (1/1443 nt) IS150 repeat region

AGCAGCCATGGACAGAAACTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCG  >  NC_000913/3625457‑3625736
                                                                                                                                      |                                                                                                                                                 
agcagcCATGGACAGAAACTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccat                                                                                                                                     <  4:91408‑M1/149‑15 (MQ=255)
        tGGACAGAAACTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttgg                                                                                                                             <  2:31896‑M1/149‑23 (MQ=255)
             aGAAACTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgat                                                                                                                        <  7:32581‑M1/149‑28 (MQ=255)
                                  cTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGACGGTTAACTGAAACTGTCCAGGTTTTGGGGGGCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaata                                                                                                   <  5:188816‑M1/149‑49 (MQ=255)
                                     gCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatat                                                                                                  <  2:55127‑M1/147‑50 (MQ=255)
                                                  tttCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaata                                                                                   >  8:5675‑M1/1‑85 (MQ=255)
                                                      gTAATCTTGCCCTGAATACATGACTGATTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtg                                                                                                                                                 <  6:180278‑M1/83‑3 (MQ=255)
                                                      gTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtg                                                                                                                                                 <  6:3681‑M1/83‑3 (MQ=255)
                                                         aTCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaataccctttt                                                                            >  2:92873‑M1/1‑78 (MQ=255)
                                                          tCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttgg                                                                                                                             <  8:43470‑M1/99‑23 (MQ=255)
                                                          tCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttgg                                                                                                                             >  7:43470‑M1/1‑77 (MQ=255)
                                                              gCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttg                                                                           <  7:5675‑M1/145‑73 (MQ=255)
                                                                          ggACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagc                                                                                          >  8:79217‑M1/1‑61 (MQ=255)
                                                                          ggACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagc                                                                                          <  7:79217‑M1/118‑58 (MQ=255)
                                                                                   aTCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgcc                                                                  >  6:192933‑M1/1‑52 (MQ=255)
                                                                                   aTCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgcc                                                                  <  5:192933‑M1/133‑82 (MQ=255)
                                                                                        aaaGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagccc                                                                                                         <  2:114064‑M1/89‑43 (MQ=255)
                                                                                        aaaGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagccc                                                                                                         >  1:114064‑M1/1‑47 (MQ=255)
                                                                                              ggTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgt                                                        >  5:66347‑M1/1‑41 (MQ=255)
                                                                                              ggTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgt                                                        <  6:66347‑M1/132‑92 (MQ=255)
                                                                                                     tGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaaacactacttcacaactgatga                                >  6:1083‑M1/1‑34 (MQ=255)
                                                                                                             tCCAGGTTTTGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttaca                        <  1:92873‑M1/149‑124 (MQ=255)
                                                                                                                   ttttGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaa                                                                                                                    <  7:159649‑M1/51‑32 (MQ=255)
                                                                                                                   ttttGGGGGTCAGTTCATAAtgtactgcacccattttgttggacgatgaaa                                                                                                                    >  8:159649‑M1/1‑20 (MQ=255)
                                                                                                                        ggggTCAGTTCATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggatcatctcg             >  2:32799‑M1/1‑15 (MQ=255)
                                                                                                                                  cATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggatcatctcggcacgtt      >  6:57694‑M1/1‑5 (MQ=255)
                                                                                                                                  cATAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggatcatctcggcacgtt      <  5:57694‑M1/146‑142 (MQ=255)
                                                                                                                                   aTAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggatcatctcggcacgttttgg  >  4:3605‑M1/1‑4 (MQ=255)
                                                                                                                                      |                                                                                                                                                 
AGCAGCCATGGACAGAAACTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCG  >  NC_000913/3625457‑3625736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: