| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,625,592 | Δ95,041 bp | IS150‑mediated | yhhJ–[mokA] | 82 genes yhhJ, rbbA, yhiI, yhiJ, yhiL, yhiL, yhiM, yhiN, pitA, uspB, uspA, dtpB, rsmJ, prlC, rlmJ, gor, dinQ, agrA, agrB, arsR, arsB, arsC, yhiS, insH1, yhiS, slp, dctR, yhiD, hdeB, hdeA, hdeD, arrS, gadE, mdtE, mdtF, gadW, gadY, gadX, gadA, yhjA, treF, yhjB, yhjC, yhjD, yhjE, yhjG, yhjH, kdgK, yhjJ, dctA, yhjK, bcsC, bcsZ, bcsB, bcsA, bcsQ, yhjR, bcsE, bcsF, bcsG, ldrD, rdlD, yhjV, dppF, dppD, dppC, dppB, dppA, proK, eptB, yhjX, yhjY, tag, yiaC, bisC, yiaD, ghrB, yiaF, yiaG, cspA, hokA, [mokA] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3625592 | 3720632 | 95041 | 94 [2] | [0] 175 | yhhJ–[mokA] | yhhJ,rbbA,yhiI,yhiJ,yhiL,yhiL,yhiM,yhiN,pitA,uspB,uspA,dtpB,rsmJ,prlC,rlmJ,gor,dinQ,agrA,agrB,arsR,arsB,arsC,yhiS,insH1,yhiS,slp,dctR,yhiD,hdeB,hdeA,hdeD,arrS,gadE,mdtE,mdtF,gadW,gadY,gadX,gadA,yhjA,treF,yhjB,yhjC,yhjD,yhjE,yhjG,yhjH,kdgK,yhjJ,dctA,yhjK,bcsC,bcsZ,bcsB,bcsA,bcsQ,yhjR,bcsE,bcsF,bcsG,ldrD,rdlD,yhjV,dppF,dppD,dppC,dppB,dppA,proK,eptB,yhjX,yhjY,tag,yiaC,bisC,yiaD,ghrB,yiaF,yiaG,cspA,hokA,[mokA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3625591 | 2 (0.020) | 90 (0.960) | 71/282 | 0.2 | 97.8% | noncoding (3/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 3720633 = | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
Only 100 of 175 total aligned reads displayed.
TAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTC > NC_000913/3720488‑3720781 | aagattccagtctttgtgaatatcgctttcaataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTa < 2:5329‑M1/4‑1 (MQ=255) agattccagtctttgtgaatatcgctttcaataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTa > 2:166379‑M1/145‑148 (MQ=255) agattccagtctttgtgaatatcgcattcaataatttgataaatgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGtaa < 1:94733‑M1/5‑2 (MQ=255) ttccagtctttgtgaatatcgctttcaataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTg < 2:340325‑M1/7‑1 (MQ=255) tccagtctttgtgaatatcgctttcaataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCa < 3:21989‑M1/9‑1 (MQ=255) cgaaaagcagccatggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGc < 3:300455‑M2/8‑1 (MQ=255) aaaagcagccatggacagaaactatctggcgtgagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcataaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCAcc < 2:138030‑M2/11‑1 (MQ=255) aaaagcagccatggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCAcc > 1:11065‑M2/139‑149 (MQ=255) gtctttgtgaatatcgctttcaataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCa < 6:71327‑M1/13‑1 (MQ=255) agccatggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCAtttt > 6:373764‑M2/133‑149 (MQ=255) tgtgaatatcgctttcaataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCAtttt > 4:257298‑M1/132‑148 (MQ=255) gtgaatatcgctttcaataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTttgt < 5:301696‑M1/19‑1 (MQ=255) tgaatatcgctttcaataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTttgtt < 8:179451‑M1/20‑1 (MQ=255) tgaatatcgctttcaataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTttgt > 8:77403‑M1/130‑148 (MQ=255) catggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTttgtt < 7:128808‑M2/20‑1 (MQ=255) catggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTttgtt < 8:145483‑M2/20‑1 (MQ=255) gaatatcgctttcaataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgggttTGTACTGCACCCATTttgtt > 5:84699‑M1/129‑148 (MQ=255) atggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTttgttg < 3:351486‑M2/21‑1 (MQ=255) acagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGAc > 7:87656‑M2/125‑148 (MQ=255) tcgctttcaataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGa < 1:176824‑M1/26‑1 (MQ=255) agaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGAt > 8:189685‑M2/123‑149 (MQ=255) gaaactatctggcgtcagtccttgcggtgagctggcttgcgtaatcttgacctgaatacactactgagtctcaaaaacccggataactgaacctgtccagggtttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATg < 5:167943‑M2/28‑1 (MQ=255) tttcaataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGa < 2:331079‑M1/29‑1 (MQ=255) tcaataatttgataaacgcggtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactggcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGaaa > 2:302590‑M1/118‑148 (MQ=255) taaataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgagtgttTGTACTGCACCCATTTTGTTGGACGATGAAAt < 1:212223‑M1/32‑1 (MQ=255) tatctggcgtcagtccttgcggggagcgggcgttcgtaatcttgcccggaatacaggtctgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATg < 1:102978‑M2/33‑1 (MQ=255) caataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAAt > 3:169997‑M1/117‑148 (MQ=255) aataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATg < 4:84637‑M1/33‑1 (MQ=255) ggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGAAGATGATATGGaa > 2:225042‑M2/112‑147 (MQ=255) atttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa > 7:187635‑M1/112‑149 (MQ=255) atttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa > 7:331049‑M1/112‑149 (MQ=255) tgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGc > 1:287357‑M1/109‑148 (MQ=255) tgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGc > 6:301696‑M1/109‑148 (MQ=255) tcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGccc > 1:397789‑M2/108‑149 (MQ=255) aacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa > 5:71327‑M1/104‑149 (MQ=255) acgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAat > 8:229337‑M1/103‑149 (MQ=255) gcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAatat < 1:252549‑M2/49‑1 (MQ=255) cacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCa < 5:228607‑M1/53‑1 (MQ=255) ggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGa > 8:359019‑M2/95‑117 (MQ=255) ggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGa < 7:359019‑M2/23‑1 (MQ=255) acttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCaaa > 7:160257‑M1/95‑149 (MQ=255) cttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAg > 8:350664‑M1/94‑149 (MQ=255) aattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCaaaa < 2:253677‑M1/62‑1 (MQ=255) cgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATAccc > 8:203104‑M2/83‑149 (MQ=255) gtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATgg < 2:350065‑M2/34‑1 (MQ=255) cgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGAACCCATTTTGTTGGACGTTGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCt < 4:29148‑M1/68‑1 (MQ=255) aatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCttt > 5:221308‑M2/80‑149 (MQ=255) ttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGa > 7:201776‑M2/76‑148 (MQ=255) gccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGaaa < 6:138365‑M2/75‑1 (MQ=255) tacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGaaaa > 5:31492‑M1/73‑148 (MQ=255) tacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGaaaa > 1:57111‑M1/73‑148 (MQ=255) ccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtttt < 7:31489‑M2/71‑1 (MQ=255) ccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGaaaa < 1:107122‑M2/76‑1 (MQ=255) ccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGaaaa < 7:114419‑M2/76‑1 (MQ=255) ccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAg < 6:196568‑M2/77‑1 (MQ=255) acatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGa > 7:72579‑M1/72‑94 (MQ=255) acatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATg < 1:175448‑M1/28‑1 (MQ=255) catcattaatgaaactaatttttttctgtcgagataacgggataggaccgtgaataataatgcgcttgttTGTACTGAACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAgc > 2:212223‑M1/71‑148 (MQ=255) tcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGcc > 1:340325‑M1/69‑149 (MQ=255) aatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGcc < 4:190168‑M2/81‑1 (MQ=255) attaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCt > 6:228607‑M1/67‑148 (MQ=255) aatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGccc > 6:34976‑M1/64‑105 (MQ=255) atgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGaa > 2:176824‑M1/63‑148 (MQ=255) gactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTc < 4:226315‑M2/52‑1 (MQ=255) gactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCACTAATATGTc > 3:226315‑M2/61‑112 (MQ=255) aacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAgtcat > 8:315437‑M1/59‑147 (MQ=255) cgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGa > 2:65435‑M1/57‑149 (MQ=255) agtatcaaaaagccggttaactgaaactgtccaggttttggggggcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGTAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCGTGAAGTCGTGa < 5:356472‑M2/93‑1 (MQ=255) tatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtttt < 1:393387‑M2/71‑1 (MQ=255) tatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAAt > 5:136434‑M2/54‑148 (MQ=255) caaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCac > 6:146984‑M2/51‑148 (MQ=255) aagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACtt < 5:146984‑M2/103‑1 (MQ=255) tgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTca < 1:313491‑M1/105‑1 (MQ=255) tcgagaaaacgggatagcaccgtgaaaaataatgcgcttgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCACCTAATATGTCAAAGCCAACATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTCCTTca > 2:240282‑M1/43‑147 (MQ=255) cggttaactgaaactgtccaggttttggtggtcagttcataaTGTACTTCACCCATTTTGTTTGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCTAAATTCCCTTTTGAAAAGCGCCTTGAAGTAGTGATTCACGACttcaag < 5:57474‑M2/107‑3 (MQ=255) gttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAACACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCac < 3:60080‑M2/98‑1 (MQ=255) gttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAACACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCac > 4:60080‑M2/41‑138 (MQ=255) gagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAAc < 1:388395‑M1/109‑1 (MQ=255) gaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACt < 3:85799‑M1/110‑1 (MQ=255) aaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCATAGCCAAAATACCATTTTGAAAAGCGCGTTGAAGTCGTTAATCACTACTTCACAACtga > 6:298434‑M1/37‑148 (MQ=255) ctgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACtgat > 4:279056‑M2/36‑148 (MQ=255) aacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACtgat < 8:88362‑M1/113‑1 (MQ=255) gaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAactgatgtt > 5:288053‑M2/34‑147 (MQ=255) gggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGatgatg > 1:253677‑M1/33‑149 (MQ=255) aaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACtgatga < 7:21577‑M2/115‑1 (MQ=255) aaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACtgatga < 7:120120‑M2/115‑1 (MQ=255) caggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGtt < 1:231222‑M2/120‑1 (MQ=255) caggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGtt > 2:231222‑M2/25‑144 (MQ=255) caggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAg > 5:376530‑M2/25‑148 (MQ=255) caggttttggggggcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAACTGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAg < 2:397789‑M2/124‑1 (MQ=255) aggttttgggggtcagttcataaTCTACTGCACCCATTTTGTAGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCATTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGTTTACAGGa > 2:267252‑M2/24‑149 (MQ=255) gtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGGGAATCACTACTTCACAACTGATGATGGTTACAGGatc > 2:389299‑M1/22‑149 (MQ=255) taataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCAtctc < 1:357882‑M1/133‑1 (MQ=255) gggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCgg < 3:279056‑M2/135‑1 (MQ=255) gttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGtt > 7:382782‑M2/9‑149 (MQ=255) gtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGGAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTg > 1:339510‑M1/6‑149 (MQ=255) ataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTg < 6:136434‑M2/144‑1 (MQ=255) ttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGgt > 3:163301‑M1/3‑148 (MQ=255) tGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAAt > 2:128323/1‑95 (MQ=255) tGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAAt < 1:128323/95‑1 (MQ=255) | TAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTC > NC_000913/3720488‑3720781 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |