Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,625,592 Δ95,041 bp IS150‑mediated yhhJ[mokA] 82 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3625592 3720632 95041 94 [2] [0] 175 yhhJ–[mokA] yhhJ,rbbA,yhiI,yhiJ,yhiL,yhiL,yhiM,yhiN,pitA,uspB,uspA,dtpB,rsmJ,prlC,rlmJ,gor,dinQ,agrA,agrB,arsR,arsB,arsC,yhiS,insH1,yhiS,slp,dctR,yhiD,hdeB,hdeA,hdeD,arrS,gadE,mdtE,mdtF,gadW,gadY,gadX,gadA,yhjA,treF,yhjB,yhjC,yhjD,yhjE,yhjG,yhjH,kdgK,yhjJ,dctA,yhjK,bcsC,bcsZ,bcsB,bcsA,bcsQ,yhjR,bcsE,bcsF,bcsG,ldrD,rdlD,yhjV,dppF,dppD,dppC,dppB,dppA,proK,eptB,yhjX,yhjY,tag,yiaC,bisC,yiaD,ghrB,yiaF,yiaG,cspA,hokA,[mokA]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 36255912 (0.020)90 (0.960) 71/282 0.2 97.8% noncoding (3/82 nt) RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 3720633 = NA (NA)noncoding (1/1443 nt) IS150 repeat region

Only 100 of 175 total aligned reads displayed.

TAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTC  >  NC_000913/3720488‑3720781
                                                                                                                                                 |                                                                                                                                                    
aagattccagtctttgtgaatatcgctttcaataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTa                                                                                                                                                   <  2:5329‑M1/4‑1 (MQ=255)
 agattccagtctttgtgaatatcgctttcaataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTa                                                                                                                                                   >  2:166379‑M1/145‑148 (MQ=255)
 agattccagtctttgtgaatatcgcattcaataatttgataaatgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGtaa                                                                                                                                                  <  1:94733‑M1/5‑2 (MQ=255)
    ttccagtctttgtgaatatcgctttcaataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTg                                                                                                                                                <  2:340325‑M1/7‑1 (MQ=255)
     tccagtctttgtgaatatcgctttcaataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCa                                                                                                                                              <  3:21989‑M1/9‑1 (MQ=255)
     cgaaaagcagccatggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGc                                                                                                                                               <  3:300455‑M2/8‑1 (MQ=255)
       aaaagcagccatggacagaaactatctggcgtgagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcataaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCAcc                                                                                                                                            <  2:138030‑M2/11‑1 (MQ=255)
       aaaagcagccatggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCAcc                                                                                                                                            >  1:11065‑M2/139‑149 (MQ=255)
         gtctttgtgaatatcgctttcaataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCa                                                                                                                                          <  6:71327‑M1/13‑1 (MQ=255)
             agccatggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCAtttt                                                                                                                                      >  6:373764‑M2/133‑149 (MQ=255)
              tgtgaatatcgctttcaataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCAtttt                                                                                                                                      >  4:257298‑M1/132‑148 (MQ=255)
               gtgaatatcgctttcaataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTttgt                                                                                                                                    <  5:301696‑M1/19‑1 (MQ=255)
                tgaatatcgctttcaataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTttgtt                                                                                                                                   <  8:179451‑M1/20‑1 (MQ=255)
                tgaatatcgctttcaataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTttgt                                                                                                                                    >  8:77403‑M1/130‑148 (MQ=255)
                catggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTttgtt                                                                                                                                   <  7:128808‑M2/20‑1 (MQ=255)
                catggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTttgtt                                                                                                                                   <  8:145483‑M2/20‑1 (MQ=255)
                 gaatatcgctttcaataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgggttTGTACTGCACCCATTttgtt                                                                                                                                   >  5:84699‑M1/129‑148 (MQ=255)
                 atggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTttgttg                                                                                                                                  <  3:351486‑M2/21‑1 (MQ=255)
                     acagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGAc                                                                                                                               >  7:87656‑M2/125‑148 (MQ=255)
                      tcgctttcaataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGa                                                                                                                             <  1:176824‑M1/26‑1 (MQ=255)
                       agaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGAt                                                                                                                            >  8:189685‑M2/123‑149 (MQ=255)
                        gaaactatctggcgtcagtccttgcggtgagctggcttgcgtaatcttgacctgaatacactactgagtctcaaaaacccggataactgaacctgtccagggtttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATg                                                                                                                           <  5:167943‑M2/28‑1 (MQ=255)
                          tttcaataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGa                                                                                                                          <  2:331079‑M1/29‑1 (MQ=255)
                            tcaataatttgataaacgcggtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactggcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGaaa                                                                                                                        >  2:302590‑M1/118‑148 (MQ=255)
                            taaataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgagtgttTGTACTGCACCCATTTTGTTGGACGATGAAAt                                                                                                                       <  1:212223‑M1/32‑1 (MQ=255)
                             tatctggcgtcagtccttgcggggagcgggcgttcgtaatcttgcccggaatacaggtctgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATg                                                                                                                      <  1:102978‑M2/33‑1 (MQ=255)
                             caataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAAt                                                                                                                       >  3:169997‑M1/117‑148 (MQ=255)
                              aataatttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATg                                                                                                                      <  4:84637‑M1/33‑1 (MQ=255)
                                  ggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGAAGATGATATGGaa                                                                                                                   >  2:225042‑M2/112‑147 (MQ=255)
                                  atttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa                                                                                                                 >  7:187635‑M1/112‑149 (MQ=255)
                                  atttgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa                                                                                                                 >  7:331049‑M1/112‑149 (MQ=255)
                                     tgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGc                                                                                                               >  1:287357‑M1/109‑148 (MQ=255)
                                     tgataaacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGc                                                                                                               >  6:301696‑M1/109‑148 (MQ=255)
                                      tcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGccc                                                                                                             >  1:397789‑M2/108‑149 (MQ=255)
                                          aacgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa                                                                                                         >  5:71327‑M1/104‑149 (MQ=255)
                                           acgctgtcacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAat                                                                                                        >  8:229337‑M1/103‑149 (MQ=255)
                                               gcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAatat                                                                                                      <  1:252549‑M2/49‑1 (MQ=255)
                                                  cacttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCa                                                                                                  <  5:228607‑M1/53‑1 (MQ=255)
                                                   ggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGa                                                                                                                                >  8:359019‑M2/95‑117 (MQ=255)
                                                   ggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGa                                                                                                                                <  7:359019‑M2/23‑1 (MQ=255)
                                                   acttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCaaa                                                                                                >  7:160257‑M1/95‑149 (MQ=255)
                                                    cttacacaattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAg                                                                                               >  8:350664‑M1/94‑149 (MQ=255)
                                                           aattacgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCaaaa                                                                                         <  2:253677‑M1/62‑1 (MQ=255)
                                                               cgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATAccc                                                                                    >  8:203104‑M2/83‑149 (MQ=255)
                                                                gtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATgg                                                                                                                     <  2:350065‑M2/34‑1 (MQ=255)
                                                                cgtaacatatacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGAACCCATTTTGTTGGACGTTGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCt                                                                                   <  4:29148‑M1/68‑1 (MQ=255)
                                                                  aatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCttt                                                                                 >  5:221308‑M2/80‑149 (MQ=255)
                                                                      ttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGa                                                                              >  7:201776‑M2/76‑148 (MQ=255)
                                                                        gccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGaaa                                                                            <  6:138365‑M2/75‑1 (MQ=255)
                                                                         tacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGaaaa                                                                           >  5:31492‑M1/73‑148 (MQ=255)
                                                                         tacatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGaaaa                                                                           >  1:57111‑M1/73‑148 (MQ=255)
                                                                         ccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtttt                                                                                <  7:31489‑M2/71‑1 (MQ=255)
                                                                         ccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGaaaa                                                                           <  1:107122‑M2/76‑1 (MQ=255)
                                                                         ccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGaaaa                                                                           <  7:114419‑M2/76‑1 (MQ=255)
                                                                         ccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAg                                                                          <  6:196568‑M2/77‑1 (MQ=255)
                                                                          acatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGa                                                                                                                                >  7:72579‑M1/72‑94 (MQ=255)
                                                                          acatcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATg                                                                                                                           <  1:175448‑M1/28‑1 (MQ=255)
                                                                           catcattaatgaaactaatttttttctgtcgagataacgggataggaccgtgaataataatgcgcttgttTGTACTGAACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAgc                                                                         >  2:212223‑M1/71‑148 (MQ=255)
                                                                             tcattaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGcc                                                                      >  1:340325‑M1/69‑149 (MQ=255)
                                                                              aatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGcc                                                                      <  4:190168‑M2/81‑1 (MQ=255)
                                                                               attaatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCt                                                                     >  6:228607‑M1/67‑148 (MQ=255)
                                                                                  aatgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGccc                                                                                                             >  6:34976‑M1/64‑105 (MQ=255)
                                                                                   atgaaacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGaa                                                                 >  2:176824‑M1/63‑148 (MQ=255)
                                                                                     gactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTc                                                                                                   <  4:226315‑M2/52‑1 (MQ=255)
                                                                                     gactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCACTAATATGTc                                                                                                   >  3:226315‑M2/61‑112 (MQ=255)
                                                                                       aacgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAgtcat                                                            >  8:315437‑M1/59‑147 (MQ=255)
                                                                                         cgaattttttactgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGa                                                          >  2:65435‑M1/57‑149 (MQ=255)
                                                                                          agtatcaaaaagccggttaactgaaactgtccaggttttggggggcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGTAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCGTGAAGTCGTGa                                                          <  5:356472‑M2/93‑1 (MQ=255)
                                                                                            tatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtttt                                                                                <  1:393387‑M2/71‑1 (MQ=255)
                                                                                            tatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAAt                                                        >  5:136434‑M2/54‑148 (MQ=255)
                                                                                               caaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCac                                                     >  6:146984‑M2/51‑148 (MQ=255)
                                                                                                   aagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACtt                                                <  5:146984‑M2/103‑1 (MQ=255)
                                                                                                     tgtcgagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTca                                              <  1:313491‑M1/105‑1 (MQ=255)
                                                                                                       tcgagaaaacgggatagcaccgtgaaaaataatgcgcttgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCACCTAATATGTCAAAGCCAACATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTCCTTca                                              >  2:240282‑M1/43‑147 (MQ=255)
                                                                                                       cggttaactgaaactgtccaggttttggtggtcagttcataaTGTACTTCACCCATTTTGTTTGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCTAAATTCCCTTTTGAAAAGCGCCTTGAAGTAGTGATTCACGACttcaag                                            <  5:57474‑M2/107‑3 (MQ=255)
                                                                                                         gttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAACACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCac                                                     <  3:60080‑M2/98‑1 (MQ=255)
                                                                                                         gttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAACACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCac                                                     >  4:60080‑M2/41‑138 (MQ=255)
                                                                                                         gagaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAAc                                          <  1:388395‑M1/109‑1 (MQ=255)
                                                                                                           gaaaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACt                                         <  3:85799‑M1/110‑1 (MQ=255)
                                                                                                             aaacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCATAGCCAAAATACCATTTTGAAAAGCGCGTTGAAGTCGTTAATCACTACTTCACAACtga                                       >  6:298434‑M1/37‑148 (MQ=255)
                                                                                                              ctgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACtgat                                      >  4:279056‑M2/36‑148 (MQ=255)
                                                                                                              aacgggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACtgat                                      <  8:88362‑M1/113‑1 (MQ=255)
                                                                                                                gaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAactgatgtt                                   >  5:288053‑M2/34‑147 (MQ=255)
                                                                                                                 gggatagcaccgtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGatgatg                                  >  1:253677‑M1/33‑149 (MQ=255)
                                                                                                                 aaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACtgatga                                    <  7:21577‑M2/115‑1 (MQ=255)
                                                                                                                 aaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACtgatga                                    <  7:120120‑M2/115‑1 (MQ=255)
                                                                                                                         caggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGtt                               <  1:231222‑M2/120‑1 (MQ=255)
                                                                                                                         caggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGtt                               >  2:231222‑M2/25‑144 (MQ=255)
                                                                                                                         caggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAg                           >  5:376530‑M2/25‑148 (MQ=255)
                                                                                                                         caggttttggggggcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAACTGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAg                           <  2:397789‑M2/124‑1 (MQ=255)
                                                                                                                          aggttttgggggtcagttcataaTCTACTGCACCCATTTTGTAGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCATTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGTTTACAGGa                         >  2:267252‑M2/24‑149 (MQ=255)
                                                                                                                            gtgaataataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGGGAATCACTACTTCACAACTGATGATGGTTACAGGatc                       >  2:389299‑M1/22‑149 (MQ=255)
                                                                                                                                 taataatgcgcgtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCAtctc                  <  1:357882‑M1/133‑1 (MQ=255)
                                                                                                                                   gggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCgg                <  3:279056‑M2/135‑1 (MQ=255)
                                                                                                                                         gttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGtt          >  7:382782‑M2/9‑149 (MQ=255)
                                                                                                                                            gtgttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGGAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTg       >  1:339510‑M1/6‑149 (MQ=255)
                                                                                                                                             ataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTg       <  6:136434‑M2/144‑1 (MQ=255)
                                                                                                                                               ttTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGgt     >  3:163301‑M1/3‑148 (MQ=255)
                                                                                                                                                 tGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAAt                                                        >  2:128323/1‑95 (MQ=255)
                                                                                                                                                 tGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAAt                                                        <  1:128323/95‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                    
TAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTC  >  NC_000913/3720488‑3720781

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: