Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,625,589 Δ95,041 bp yhhJ[mokA] 82 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3625589 3720629 95041 91 [0] [0] 91 yhhJ–[mokA] yhhJ,rbbA,yhiI,yhiJ,yhiL,yhiL,yhiM,yhiN,pitA,uspB,uspA,dtpB,rsmJ,prlC,rlmJ,gor,dinQ,agrA,agrB,arsR,arsB,arsC,yhiS,insH1,yhiS,slp,dctR,yhiD,hdeB,hdeA,hdeD,arrS,gadE,mdtE,mdtF,gadW,gadY,gadX,gadA,yhjA,treF,yhjB,yhjC,yhjD,yhjE,yhjG,yhjH,kdgK,yhjJ,dctA,yhjK,bcsC,bcsZ,bcsB,bcsA,bcsQ,yhjR,bcsE,bcsF,bcsG,ldrD,rdlD,yhjV,dppF,dppD,dppC,dppB,dppA,proK,eptB,yhjX,yhjY,tag,yiaC,bisC,yiaD,ghrB,yiaF,yiaG,cspA,hokA,[mokA]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 36255880 (0.000)91 (1.070) 76/282 0.1 100% intergenic (+74/+91) yhhI/yhhJ putative transposase/putative ABC transporter permease
?NC_000913 3720630 = NA (NA)pseudogene (3/185 nt) mokA pseudogene, overlapping regulatory peptide, enables hokB; completely contained in another CDS

AGCTCATAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTT  >  NC_000913/3720482‑3720775
                                                                                                                                                    |                                                                                                                                                 
gacgtaagatgcgaaaagcagccatggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcag                                                                                                                                                   <  3:93034‑M2/1‑1 (MQ=255)
gacgtaagatgcgaaaagcagccatggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcag                                                                                                                                                   >  6:178467‑M2/149‑149 (MQ=255)
 acgtaagatgcgaaaagcagccatggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcagt                                                                                                                                                  <  4:20432‑M2/2‑1 (MQ=255)
 acgtaagatgcgaaaagcagccatggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcagt                                                                                                                                                  <  8:58223‑M2/2‑1 (MQ=255)
  cgtaagatgcgaaaagcagccatggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcataaagccggttaactgaaactgtccaggttttgtgggtcagttcagt                                                                                                                                                  <  8:106683‑M2/2‑1 (MQ=255)
     aagatgcgaaaagcagccatggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATg                                                                                                                                               >  2:361123‑M2/144‑148 (MQ=255)
     aagatgcgaaaagcagccatggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATg                                                                                                                                               >  2:15863‑M2/144‑148 (MQ=255)
     aagatgcgaaaagcagccatggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATg                                                                                                                                               >  6:193065‑M2/144‑148 (MQ=255)
        atgcgaaaagcagccatggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACt                                                                                                                                           <  1:173726‑M2/9‑1 (MQ=255)
          gcgaaaagcagccatggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgcaactgtccaggttttgggggtcagttcaGTATGTACTg                                                                                                                                          >  6:246315‑M2/139‑148 (MQ=255)
            gaaaagcagccatggacagaaactatctggcgtcagtccttgcggggagcgggcttgcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccagggtttggggggcagttcaGTATGTACTGCAc                                                                                                                                       <  1:130751‑M2/13‑1 (MQ=255)
                   atcaatggacagaaactatctggcttcagtccttgcgggtagagggatttagtaatctttcactgaatacaggactgagtatcaaaaagccggttaactgaaactgtccagtttttgggggtaagttcaGTATGTACTGAACCCAttt                                                                                                                                 <  6:351945‑M2/19‑1 (MQ=255)
                   agccatggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCAtttt                                                                                                                                <  6:86332‑M2/20‑1 (MQ=255)
                    gccatggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTttg                                                                                                                               <  2:222009‑M2/21‑1 (MQ=255)
                    gccatggacagaaactatctggcgtcagtccttgcgcggagcgggctttcgtaatcttgcccagaatacaggactgactatcaaaaagccggttaactgaaactgtccaggttttgggggacagtgcaGTATGTACTGCACCCATTttg                                                                                                                               >  1:250958‑M2/129‑149 (MQ=255)
                       atggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTttgttg                                                                                                                            <  8:86899‑M2/24‑1 (MQ=255)
                           acagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGAc                                                                                                                         >  7:212468‑M2/122‑148 (MQ=255)
                            cagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGa                                                                                                                       <  1:361123‑M2/29‑1 (MQ=255)
                            cagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGa                                                                                                                       <  5:193065‑M2/29‑1 (MQ=255)
                               aaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATg                                                                                                                     >  4:331737‑M2/118‑148 (MQ=255)
                                aactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTttgtt                                                                                                                             <  1:54799‑M2/23‑1 (MQ=255)
                                aactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTttgtt                                                                                                                             >  2:54799‑M2/117‑139 (MQ=255)
                                 actatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGaaa                                                                                                                  <  7:188957‑M2/34‑1 (MQ=255)
                                     tctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGAACCCATTTTGTTGGACGATGAAATgg                                                                                                               >  4:257599‑M2/112‑148 (MQ=255)
                                         gcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGaa                                                                                                             <  4:203703‑M2/39‑1 (MQ=255)
                                         gcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGa                                                                                                              <  3:257599‑M2/38‑1 (MQ=255)
                                             cagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc                                                                                                      <  8:212468‑M2/46‑1 (MQ=255)
                                               gtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaacggaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCt                                                                                                     >  1:103709‑M2/102‑148 (MQ=255)
                                                tccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa                                                                                                   >  5:153010‑M2/101‑149 (MQ=255)
                                                      cggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGt                                                                                              >  4:79958‑M2/95‑148 (MQ=255)
                                                       ggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTc                                                                                             >  4:80409‑M2/94‑148 (MQ=255)
                                                        gggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCa                                                                                            >  5:37928‑M2/93‑148 (MQ=255)
                                                            gcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc                                                                                                      >  3:180679‑M2/89‑134 (MQ=255)
                                                            gcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc                                                                                                      <  4:180679‑M2/46‑1 (MQ=255)
                                                                gctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCaaaa                                                                                   >  6:100823‑M2/85‑149 (MQ=255)
                                                                  tttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATa                                                                                 >  4:321836‑M2/83‑149 (MQ=255)
                                                                     cgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATAcc                                                                               <  3:297457‑M2/69‑1 (MQ=255)
                                                                      gtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATAccc                                                                              <  8:62374‑M2/70‑1 (MQ=255)
                                                                      gtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATAccc                                                                              <  5:100823‑M2/70‑1 (MQ=255)
                                                                      gtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCt                                                                             >  2:178745‑M2/79‑149 (MQ=255)
                                                                       taatcttgcccttaatacaggtctgagtatcaaaaagccggttaactgaaaatttccaggttttgggtttcagttcaTTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtt                                                                            <  1:15863‑M2/72‑1 (MQ=255)
                                                                       taatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtt                                                                            <  3:79958‑M2/72‑1 (MQ=255)
                                                                       taatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtt                                                                            <  5:61332‑M2/72‑1 (MQ=255)
                                                                       taatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcacttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtt                                                                            >  1:158997‑M2/78‑149 (MQ=255)
                                                                           cttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTg                                                                         >  1:139269‑M2/74‑148 (MQ=255)
                                                                               ccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGaaaa                                                                     <  1:29520‑M2/79‑1 (MQ=255)
                                                                               ccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAg                                                                    <  3:321836‑M2/80‑1 (MQ=255)
                                                                                cctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAgc                                                                   >  4:209664‑M2/69‑149 (MQ=255)
                                                                                 ctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAgcg                                                                  >  7:115403‑M2/68‑149 (MQ=255)
                                                                                    aatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCt                                                               >  7:45108‑M2/65‑149 (MQ=255)
                                                                                     atacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCtt                                                              >  3:114572‑M2/64‑149 (MQ=255)
                                                                                     atacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCtt                                                              <  5:178467‑M2/86‑1 (MQ=255)
                                                                                         aggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATg                                                                                                                >  2:283556‑M2/60‑95 (MQ=255)
                                                                                           gcctgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTc                                                        <  8:346691‑M2/92‑1 (MQ=255)
                                                                                           gactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTc                                                        <  3:209664‑M2/92‑1 (MQ=255)
                                                                                           gactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTc                                                        >  5:314459‑M2/58‑149 (MQ=255)
                                                                                             ctgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGt                                                      <  3:28188‑M2/94‑1 (MQ=255)
                                                                                             ctgagtatcaaaaagcaggttaactgaaactgtccatgttttgggtgtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGt                                                      <  1:259244‑M2/94‑1 (MQ=255)
                                                                                              tgattatcaaaaagccgtttaaatgaaactgtccaggttttgggggtcagttcaGTATGTACTTCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGaaaa                                                                     <  7:20017‑M2/79‑1 (MQ=255)
                                                                                              tgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATCGAATAGCCACTAATATGTCAAAGCCAAAATACCCTATTCaaaa                                                                     >  8:20017‑M2/55‑133 (MQ=255)
                                                                                                 gtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAAt                                                  <  6:37928‑M2/98‑1 (MQ=255)
                                                                                                  tatcaaaaagccggttaactgaaactgtccaggtttggggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATTTCAAAGCCAAAATAACCTTTTGAACTGCGCCTTGAATTAGTGAAt                                                  >  6:19455‑M2/51‑148 (MQ=255)
                                                                                                   atcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAat                                                                                                  <  7:97060‑M2/50‑1 (MQ=255)
                                                                                                   atcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAat                                                                                                  >  8:97060‑M2/50‑99 (MQ=255)
                                                                                                    tcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCac                                               >  4:31400‑M2/49‑149 (MQ=255)
                                                                                                      aaatatccggttaactgaaactgtccaggttttgggggtcaggtcaGTATGTAATGCACCCATTTTGTTTGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAATGCGCCTTGAAGTCGTGAATCac                                               <  2:278459‑M2/101‑1 (MQ=255)
                                                                                                      aaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATATCCCCTAATATGTCAAATCCAAAATACACTTTTGAAAAGAGCCTTGAAGTCTTGAATCac                                               >  1:278459‑M2/47‑147 (MQ=255)
                                                                                                      aaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtttt                                                                          <  4:115160‑M2/74‑1 (MQ=255)
                                                                                                      aaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtttt                                                                          >  3:115160‑M2/47‑120 (MQ=255)
                                                                                                         aagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTc                                                        <  8:94115‑M2/92‑1 (MQ=255)
                                                                                                         aagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTc                                                        >  7:94115‑M2/44‑135 (MQ=255)
                                                                                                          agccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTc                                         <  2:139269‑M2/107‑1 (MQ=255)
                                                                                                            ccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTcac                                       <  5:103853‑M2/109‑1 (MQ=255)
                                                                                                                ttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACt                                   <  1:320663‑M2/113‑1 (MQ=255)
                                                                                                                  aactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACtg                                  <  3:13315‑M2/114‑1 (MQ=255)
                                                                                                                   actgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACtga                                 <  8:115403‑M2/115‑1 (MQ=255)
                                                                                                                    ctgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAATCGCCTTGAAGTCGTCAATCACTACTTCACAACtcat                                >  8:247813‑M2/33‑148 (MQ=255)
                                                                                                                       aaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACtgatga                              <  7:196301‑M2/118‑1 (MQ=255)
                                                                                                                       aaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACtgatga                              >  8:196301‑M2/30‑147 (MQ=255)
                                                                                                                       aaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACtgatga                              <  2:103709‑M2/118‑1 (MQ=255)
                                                                                                                       aaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGatgatg                            <  3:31400‑M2/120‑1 (MQ=255)
                                                                                                                        aactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCATAATATGTCAAAGCCAAAAAACCCTTTTGAAAAGCGCCTTGAAGTCTTGAATCACTACTTCACAACTGATGAAgg                           >  2:155298‑M2/29‑149 (MQ=255)
                                                                                                                             tccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTa                        >  5:15651‑M2/24‑147 (MQ=255)
                                                                                                                               caggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCactac                                            <  6:166964‑M2/104‑1 (MQ=255)
                                                                                                                                aggttttgggtgtcagttcaGTATGTACTGCACCCATTTTGTTTGACGATGAATTGGAATAGCCCCTATTATGTGAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCTCTACTTCACAACTGATGATGGTTACAGGa                   <  8:306421‑M2/129‑1 (MQ=255)
                                                                                                                                         gtgtcagttcaGTATGTACGTCACCCATTTTTTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGGCGTTAATCACTACTTCACACCTGATGATGGGTACAGGATCATCTCg           <  3:309527‑M2/137‑1 (MQ=255)
                                                                                                                                         gggtcaggtcaGTATGTACTGCACCCATTTTGTTGGACGATGAACTGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCgg          <  3:187315‑M2/138‑1 (MQ=255)
                                                                                                                                               gttcaGTATGTAATGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTAGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCTGCACGtt    <  1:75336‑M2/144‑1 (MQ=255)
                                                                                                                                                ttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGaa                                                   <  8:274300‑M2/97‑1 (MQ=255)
                                                                                                                                                ttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGaa                                                   >  7:274300‑M2/5‑101 (MQ=255)
                                                                                                                                                  caGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGtttt  <  5:246315‑M2/146‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                 
AGCTCATAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTT  >  NC_000913/3720482‑3720775

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.