mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 17 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3814363 | 124 (0.950) | 3 (0.020) | 3/478 | NT | 2.2% | coding (432/456 nt) | dut | deoxyuridinetriphosphatase |
| ? | NC_000913 | = 3815441 | 153 (1.230) | coding (328/642 nt) | pyrE | orotate phosphoribosyltransferase | |||||
| * | ? | NC_000913 | = 3607578 | 130 (0.990) | 3 (0.020) | 3/486 | NT | 2.5% | coding (1128/2199 nt) | zntA | zinc, cobalt and lead efflux system |
| ? | NC_000913 | = 3607670 | 110 (0.870) | coding (1220/2199 nt) | zntA | zinc, cobalt and lead efflux system | |||||
| * | ? | NC_000913 | = 3220246 | 148 (1.130) | 5 (0.040) | 5/484 | NT | 3.2% | coding (753/1380 nt) | patA | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent |
| ? | NC_000913 | = 3220398 | 162 (1.290) | coding (905/1380 nt) | patA | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent | |||||
| * | ? | NC_000913 | = 2713829 | 150 (1.150) | 5 (0.040) | 5/482 | NT | 3.8% | coding (934/1335 nt) | srmB | ATP‑dependent RNA helicase |
| ? | NC_000913 | = 2713908 | 109 (0.870) | coding (1013/1335 nt) | srmB | ATP‑dependent RNA helicase | |||||
| * | ? | NC_000913 | = 2414788 | 127 (0.970) | 3 (0.020) | 3/486 | NT | 2.4% | coding (42/2145 nt) | pta | phosphate acetyltransferase |
| ? | NC_000913 | 2414804 = | 125 (0.990) | coding (58/2145 nt) | pta | phosphate acetyltransferase | |||||
| * | ? | NC_000913 | = 2414510 | 161 (1.230) | 3 (0.020) | 3/492 | NT | 1.8% | coding (1041/1203 nt) | ackA | acetate kinase A and propionate kinase 2 |
| ? | NC_000913 | 2414520 = | 163 (1.270) | coding (1051/1203 nt) | ackA | acetate kinase A and propionate kinase 2 | |||||
| * | ? | NC_000913 | 2268434 = | 144 (1.100) | 3 (0.020) | 3/488 | NT | 2.3% | coding (606/987 nt) | yeiR | Zn‑stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein |
| ? | NC_000913 | 2268515 = | 111 (0.880) | coding (687/987 nt) | yeiR | Zn‑stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein | |||||
| * | ? | NC_000913 | = 1590598 | 103 (0.790) | 4 (0.030) | 4/486 | NT | 3.9% | intergenic (‑62/+256) | yneL/hipA | pseudogene, AraC family/inactivating GltX kinase facilitating persister formation; toxin of HipAB TA pair; autokinase |
| ? | NC_000913 | = 1590605 | 99 (0.780) | intergenic (‑69/+249) | yneL/hipA | pseudogene, AraC family/inactivating GltX kinase facilitating persister formation; toxin of HipAB TA pair; autokinase | |||||
| * | ? | NC_000913 | 1560542 = | 121 (0.920) | 3 (0.020) | 3/500 | NT | 2.8% | coding (388/1023 nt) | ddpB | D,D‑dipeptide ABC transporter permease |
| ? | NC_000913 | 1560822 = | 88 (0.680) | coding (108/1023 nt) | ddpB | D,D‑dipeptide ABC transporter permease | |||||
| * | ? | NC_000913 | = 1427373 | 118 (0.930) | 3 (0.020) +GCA |
3/484 | NT | 2.4% | pseudogene (920/933 nt) | tmpR | Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| ? | NC_000913 | 1427374 = | 124 (0.950) | pseudogene (921/933 nt) | tmpR | Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein | |||||