mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4162839 | 121 (1.370) | 3 (0.040) | 3/418 | NT | 2.4% | coding (432/1101 nt) | trmA | tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase |
| ? | NC_000913 | = 4162849 | 126 (1.480) | coding (422/1101 nt) | trmA | tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase | |||||
| * | ? | NC_000913 | 2765420 = | 85 (0.960) | 3 (0.040) | 3/344 | NT | 3.9% | intergenic (‑267/+93) | yfjL/yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein |
| ? | NC_000913 | = 2765411 | 82 (1.170) | intergenic (‑258/+102) | yfjL/yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | = 2515616 | NA (NA) | 4 (0.050) | 4/428 | NT | 3.9% | noncoding (1344/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 2536312 = | 98 (1.120) | coding (479/510 nt) | crr | glucose‑specific enzyme IIA component of PTS | |||||
| * | ? | NC_000913 | 1698341 = | 80 (0.910) | 3 (0.040) | 3/412 | NT | 3.8% | coding (840/1029 nt) | malI | transcriptional repressor of Mal regulon |
| ? | NC_000913 | 1698398 = | 75 (0.890) | coding (783/1029 nt) | malI | transcriptional repressor of Mal regulon | |||||
| * | ? | NC_000913 | 395867 = | 99 (1.120) | 3 (0.040) | 3/418 | NT | 3.2% | coding (421/1158 nt) | ampH | D‑alanyl‑D‑alanine‑ carboxypeptidase/endopeptidase; penicillin‑binding protein; weak beta‑lactamase |
| ? | NC_000913 | 395897 = | 85 (1.000) | coding (391/1158 nt) | ampH | D‑alanyl‑D‑alanine‑ carboxypeptidase/endopeptidase; penicillin‑binding protein; weak beta‑lactamase | |||||
| * | ? | NC_000913 | 225739 = | 160 (1.820) | 7 (0.080) +ACTTCA |
3/420 | NT | 4.9% | intergenic (+164/‑20) | alaV/rrlH | tRNA‑Ala/23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 4037483 | 117 (1.330) | intergenic (+148/‑36) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon | |||||