mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 17 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4430454 | 193 (1.200) | 4 (0.030) | 4/490 | NT | 2.1% | coding (591/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter |
| ? | NC_000913 | = 4430465 | 191 (1.230) | coding (602/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter | |||||
| * | ? | NC_000913 | = 4273476 | 175 (1.090) | 3 (0.020) | 3/498 | NT | 1.7% | coding (396/2823 nt) | uvrA | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC |
| ? | NC_000913 | = 4273490 | 184 (1.160) | coding (382/2823 nt) | uvrA | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC | |||||
| * | ? | NC_000913 | 3992522 = | 268 (1.670) | 7 (0.040) | 7/492 | NT | 2.6% | coding (1370/2547 nt) | cyaA | adenylate cyclase |
| ? | NC_000913 | = 3992516 | 263 (1.680) | coding (1364/2547 nt) | cyaA | adenylate cyclase | |||||
| * | ? | NC_000913 | 3927418 = | 239 (1.480) | 7 (0.050) | 7/482 | NT | 3.1% | coding (264/993 nt) | asnA | asparagine synthetase A |
| ? | NC_000913 | 3927457 = | 213 (1.390) | coding (303/993 nt) | asnA | asparagine synthetase A | |||||
| * | ? | NC_000913 | = 3527657 | 162 (1.010) | 8 (0.050) | 8/506 | NT | 4.8% | coding (1189/2136 nt) | yrfF | putative RcsCDB‑response attenuator, inner membrane protein |
| ? | NC_000913 | 3527663 = | 153 (0.950) | coding (1195/2136 nt) | yrfF | putative RcsCDB‑response attenuator, inner membrane protein | |||||
| * | ? | NC_000913 | = 3154353 | 158 (0.980) | 4 (0.030) | 4/488 | NT | 2.5% | coding (866/957 nt) | yqhC | transcriptional activator of yqhD |
| ? | NC_000913 | = 3154366 | 158 (1.020) | coding (853/957 nt) | yqhC | transcriptional activator of yqhD | |||||
| * | ? | NC_000913 | 2706126 = | 170 (1.060) | 3 (0.020) | 3/490 | NT | 1.8% | coding (999/1800 nt) | lepA | back‑translocating elongation factor EF4, GTPase |
| ? | NC_000913 | 2706190 = | 162 (1.040) | coding (935/1800 nt) | lepA | back‑translocating elongation factor EF4, GTPase | |||||
| * | ? | NC_000913 | = 2537075 | 166 (1.030) | 3 (0.020) | 3/490 | NT | 1.8% | coding (163/852 nt) | pdxK | pyridoxal‑pyridoxamine kinase/hydroxymethylpyrimidine kinase |
| ? | NC_000913 | = 2537076 | 164 (1.050) | coding (162/852 nt) | pdxK | pyridoxal‑pyridoxamine kinase/hydroxymethylpyrimidine kinase | |||||
| * | ? | NC_000913 | = 2331858 | 176 (1.090) | 5 (0.030) | 5/490 | NT | 2.8% | pseudogene (2545/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein |
| ? | NC_000913 | = 2331859 | 173 (1.110) | pseudogene (2544/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein | |||||
| * | ? | NC_000913 | 1718531 = | 117 (0.730) | 3 (0.020) | 3/486 | NT | 2.6% | coding (1072/1110 nt) | anmK | anhydro‑N‑acetylmuramic acid kinase |
| ? | NC_000913 | 1718600 = | 112 (0.720) | coding (1003/1110 nt) | anmK | anhydro‑N‑acetylmuramic acid kinase | |||||