mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 26 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3981101 | 136 (1.780) | 4 (0.050) | 4/488 | NT | 3.0% | coding (215/1386 nt) | yifK | putative APC family amino acid transporter |
| ? | NC_000913 | = 3981102 | 131 (1.780) | coding (216/1386 nt) | yifK | putative APC family amino acid transporter | |||||
| * | ? | NC_000913 | 3958361 = | 182 (2.390) | 4 (0.050) | 3/490 | NT | 2.0% | coding (392/1476 nt) | ilvC | ketol‑acid reductoisomerase, NAD(P)‑binding |
| ? | NC_000913 | 3958579 = | 219 (2.960) | coding (610/1476 nt) | ilvC | ketol‑acid reductoisomerase, NAD(P)‑binding | |||||
| * | ? | NC_000913 | 3955661 = | 195 (2.560) | 7 (0.090) | 6/494 | NT | 3.9% | coding (331/1545 nt) | ilvA | l‑threonine dehydratase, biosynthetic; also known as threonine deaminase |
| ? | NC_000913 | 3955904 = | 159 (2.140) | coding (574/1545 nt) | ilvA | l‑threonine dehydratase, biosynthetic; also known as threonine deaminase | |||||
| * | ? | NC_000913 | 3946006 = | 141 (1.850) | 3 (0.040) | 3/494 | NT | 2.1% | noncoding (2303/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | 4039685 = | NA (NA) | noncoding (2167/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | 3895550 = | 186 (2.440) | 7 (0.090) | 7/500 | NT | 3.9% | coding (1060/1338 nt) | adeP | adenine permease, high affinity; adenine:H+ symporter |
| ? | NC_000913 | 3896009 = | 163 (2.160) | coding (601/1338 nt) | adeP | adenine permease, high affinity; adenine:H+ symporter | |||||
| * | ? | NC_000913 | = 3890130 | 180 (2.360) | 6 (0.080) | 6/496 | NT | 3.2% | coding (1401/1416 nt) | tnaA | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
| ? | NC_000913 | = 3890268 | 192 (2.570) | coding (33/1248 nt) | tnaB | tryptophan transporter of low affinity | |||||
| * | ? | NC_000913 | 3873459 = | 211 (2.770) | 5 (0.070) | 5/492 | NT | 2.3% | coding (154/618 nt) | dgoA | 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase |
| ? | NC_000913 | 3873658 = | 211 (2.840) | coding (817/879 nt) | dgoK | 2‑oxo‑3‑deoxygalactonate kinase | |||||
| * | ? | NC_000913 | = 3867684 | 141 (1.850) | 3 (0.040) | 3/490 | NT | 1.7% | intergenic (‑262/‑44) | ibpA/yidQ | heat shock chaperone/DUF1375 family outer membrane protein |
| ? | NC_000913 | = 3868062 | 206 (2.790) | coding (1248/1248 nt) | yidR | DUF3748 family protein | |||||
| * | ? | NC_000913 | = 3856476 | 164 (2.150) | 4 (0.050) | 3/494 | NT | 2.2% | coding (62/450 nt) | yidI | inner membrane protein |
| ? | NC_000913 | = 3856655 | 202 (2.710) | coding (241/450 nt) | yidI | inner membrane protein | |||||
| * | ? | NC_000913 | 3440621 = | 97 (1.270) | 4 (0.050) | 4/490 | NT | 4.8% | coding (409/990 nt) | rpoA | RNA polymerase, alpha subunit |
| ? | NC_000913 | 3440888 = | 64 (0.870) | coding (142/990 nt) | rpoA | RNA polymerase, alpha subunit | |||||