mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,875,522 | 0 | C | G | 32.4% | 50.9 / 23.4 | 39 | L29V (CTG→GTG) ‡ | yidX | putative lipoprotein |
| * | NC_000913 | 3,875,521 | 0 | T | C | 31.6% | 45.2 / 23.5 | 39 | A28A (GCT→GCC) | yidX | putative lipoprotein |
| * | NC_000913 | 3,875,529 | 0 | C | G | 30.0% | 77.0 / 13.2 | 41 | S31C (TCC→TGC) | yidX | putative lipoprotein |
| * | NC_000913 | 3,875,524 | 0 | G | C | 27.5% | 65.4 / 20.6 | 40 | L29L (CTG→CTC) ‡ | yidX | putative lipoprotein |
| * | NC_000913 | 3,875,531 | 0 | C | T | 27.5% | 63.2 / 11.1 | 41 | H32Y (CAT→TAT) ‡ | yidX | putative lipoprotein |
| * | NC_000913 | 3,875,532 | 0 | A | T | 26.8% | 69.4 / 17.0 | 41 | H32L (CAT→CTT) ‡ | yidX | putative lipoprotein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 26 (1.050) | 3 (0.130) | 3/494 | 2.2 | 11.1% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 23 (0.960) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 3640442 = | 46 (1.860) | 4 (0.160) | 3/506 | 2.2 | 10.1% | coding (332/435 nt) | uspA | universal stress global response regulator |
| ? | NC_000913 | 3640978 = | 26 (1.060) | coding (117/1470 nt) | dtpB | dipeptide and tripeptide permease B | |||||
| * | ? | NC_000913 | 3638588 = | 18 (0.730) | 3 (0.120) | 3/500 | 2.2 | 12.3% | coding (947/1500 nt) | pitA | phosphate transporter, low‑affinity; tellurite importer |
| ? | NC_000913 | 3638811 = | 25 (1.030) | coding (1170/1500 nt) | pitA | phosphate transporter, low‑affinity; tellurite importer | |||||
| * | ? | NC_000913 | = 1519776 | 19 (0.770) | 3 (0.120) | 3/502 | 2.2 | 12.1% | coding (750/1038 nt) | curA | curcumin/dihydrocurcumin reductase, NADPH‑dependent |
| ? | NC_000913 | = 1519950 | 25 (1.030) | coding (924/1038 nt) | curA | curcumin/dihydrocurcumin reductase, NADPH‑dependent | |||||
| * | ? | NC_000913 | 1388025 = | 24 (0.970) | 3 (0.120) | 3/500 | 2.2 | 11.7% | coding (1306/1542 nt) | tyrR | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase |
| ? | NC_000913 | 1388107 = | 22 (0.910) | coding (1388/1542 nt) | tyrR | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase | |||||