mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM260480 | 2,824,760 | 0 | C | . | 26.3% | 49.4 / 13.6 | 19 | coding (1251/1584 nt) | h16_B2500 | sulfite reductase [NADPH] flavoprotein alpha‑component |
| * | AM260480 | 2,824,761 | 0 | C | . | 26.3% | 49.7 / 13.6 | 19 | coding (1250/1584 nt) | h16_B2500 | sulfite reductase [NADPH] flavoprotein alpha‑component |
| * | AM260480 | 78,460 | 0 | A | T | 24.0% | 50.5 / 13.9 | 25 | intergenic (‑82/‑106) | h16_B0069/amn | Acetyltransferase/AMP nucleosidase |
| * | AM260480 | 78,461 | 0 | A | T | 24.0% | 49.2 / 14.2 | 25 | intergenic (‑83/‑105) | h16_B0069/amn | Acetyltransferase/AMP nucleosidase |
| * | AM260479 | 206,853 | 0 | A | T | 23.1% | 53.6 / 14.0 | 26 | L228Q (CTG→CAG) | h16_A0193 | Putative GTPase (G3E family) |
| * | AM260480 | 580,260 | 0 | C | G | 22.7% | 46.2 / 11.6 | 22 | G69A (GGC→GCC) | h16_B0514 | transcriptional regulator, GntR‑family |
| * | AM260479 | 3,286,269 | 0 | C | G | 22.2% | 60.3 / 15.2 | 27 | A392G (GCC→GGC) | nadB | L‑Aspartate oxidase |
| * | AM260479 | 1,346,076 | 0 | T | A | 21.7% | 49.7 / 10.9 | 23 | I71N (ATT→AAT) | h16_A1241 | ABC‑type transporter, permease component: HAAT family |
| * | AM260479 | 3,594,496 | 0 | A | T | 21.4% | 63.7 / 12.4 | 28 | Q58L (CAG→CTG) | trpC | Indole‑3‑glycerol phosphate synthase |
| * | AM260479 | 2,361,317 | 1 | . | C | 21.1% | 43.9 / 11.6 | 19 | coding (955/1419 nt) | czrS | signal transduction histidine kinase, heavy metal sensor |
| * | AM260480 | 1,668,739 | 1 | . | C | 21.1% | 43.6 / 11.6 | 19 | coding (268/1524 nt) | h16_B1486 | conserved hypothetical membrane associated protein |
| Marginal new junction evidence (lowest skew 10 of 170 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 276269 | 46 (1.810) | 4 (0.270) +43 bp |
4/120 | 1.1 | 13.9% | coding (919/942 nt) | h16_A0265 | transcriptional regulator, LysR‑family |
| ? | AM260479 | 276313 = | 39 (1.530) | coding (875/942 nt) | h16_A0265 | transcriptional regulator, LysR‑family | |||||
| * | ? | AM260479 | 143476 = | 36 (1.410) | 6 (0.270) | 6/182 | 1.3 | 16.7% | coding (549/651 nt) | pcp | Pyroglutamyl‑peptidase I |
| ? | AM260479 | 143739 = | 28 (1.250) | coding (1103/1251 nt) | h16_A0130 | predicted integral membrane protein | |||||
| * | ? | AM260479 | = 2229710 | 39 (1.530) | 6 (0.290) | 5/170 | 1.4 | 16.0% | coding (178/711 nt) | h16_A2053 | uridylate kinase |
| ? | AM260479 | = 2229692 | 31 (1.480) | coding (196/711 nt) | h16_A2053 | uridylate kinase | |||||
| * | ? | AM260479 | = 493536 | 29 (1.140) | 6 (0.260) | 6/190 | 1.4 | 19.4% | coding (1654/1899 nt) | h16_A0466 | ABC‑type transporter, ATPase and permease components: HMT family |
| ? | AM260479 | = 493620 | 23 (0.980) | coding (1738/1899 nt) | h16_A0466 | ABC‑type transporter, ATPase and permease components: HMT family | |||||
| * | ? | AM260479 | = 3250851 | 20 (0.790) | 5 (0.220) | 5/188 | 1.5 | 18.8% | coding (141/882 nt) | h16_A3004 | 3‑Hydroxyisobutyrate dehydrogenase |
| ? | AM260479 | = 3250890 | 25 (1.080) | coding (180/882 nt) | h16_A3004 | 3‑Hydroxyisobutyrate dehydrogenase | |||||
| * | ? | AM260479 | = 2835611 | 37 (1.450) | 4 (0.200) +24 bp |
4/158 | 1.5 | 12.1% | coding (217/927 nt) | livH1 | ABC‑type transporter, permease component: HAAT family |
| ? | AM260479 | 2835636 = | 39 (1.530) | coding (192/927 nt) | livH1 | ABC‑type transporter, permease component: HAAT family | |||||
| * | ? | AM260480 | 2594943 = | 41 (1.360) | 6 (0.230) | 6/178 | 1.6 | 15.3% | coding (1877/1950 nt) | h16_B2295 | Methyl‑accepting chemotaxis protein i |
| ? | AM260480 | 2594957 = | 31 (1.190) | coding (1863/1950 nt) | h16_B2295 | Methyl‑accepting chemotaxis protein i | |||||
| * | ? | AM260479 | 3536035 = | 27 (1.060) | 5 (0.210) | 5/190 | 1.6 | 17.6% | coding (891/984 nt) | ddlB | D‑Alanine‑D‑Alanine ligase |
| ? | AM260479 | 3536120 = | 22 (0.940) | coding (806/984 nt) | ddlB | D‑Alanine‑D‑Alanine ligase | |||||
| * | ? | AM260480 | 2342012 = | 41 (1.360) | 5 (0.200) | 5/174 | 1.7 | 12.7% | coding (1579/1596 nt) | h16_B2083 | MFS transporter, DHA2 family |
| ? | AM260480 | 2342028 = | 34 (1.340) | coding (1563/1596 nt) | h16_B2083 | MFS transporter, DHA2 family | |||||
| * | ? | AM260480 | 12933 = | 28 (0.930) | 5 (0.200) | 5/170 | 1.7 | 16.6% | coding (1045/2439 nt) | h16_B0012 | EPS I polysaccharide export protein, putative tyrosine‑protein kinase |
| ? | AM260480 | 12951 = | 27 (1.090) | coding (1063/2439 nt) | h16_B0012 | EPS I polysaccharide export protein, putative tyrosine‑protein kinase | |||||