New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AM260479 | 124227 = | 15 (0.560) | 4 (0.160) | 4/192 | 1.9 | 25.1% | coding (59/471 nt) | h16_A0110 | conserved hypothetical protein |
? | AM260479 | 124250 = | 10 (0.410) | coding (36/471 nt) | h16_A0110 | conserved hypothetical protein |
GTCCGGGCAAGGCATGAACATGACCGCGCGCTCCTCGCTGACCCTGCGCCTGATGGCCGCGGCCGCGCTCGCCGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260479/124304‑124227 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcggcCATCAGGCGCAGGGTCAGCGAGGAGCGCGCGGTCATGTTCATGCCTTGCCCGGACGGCGCAGGTGCCAGTCGGTCGCCTGCTGGAACGCGTGCGCGGTCTGCAGCAGGCGCGCCTCGTCGAAGTAG > AM260479/124250‑124375 GTCCGGGCAAGGCATGAACATGACCGCGCGCTCCTCGCTGACCCTGCGCCTGATGGCCGCGGCCGCGCTCGCCGCGGCCATCAGGCGC > 1:714362/1‑88 GTCCGGGCAAGGCATGAACATGACCGCGCGCTCCTCGCTGACCCTGCGCCTGATGGCCGCGGCCGCGCTCGCCGCGGCCATCAGGCGC < 2:714362/88‑1 GCCGCGGCCGCGCTCGCCGCGGCCATCAGGCGCAGGGTCAGCGAGGAGCGCGCGGTCA < 1:487206/58‑1 GCCGCGGCCGCGCTCGCCGCGGCCATCAGGCGCAGGGTCAGCGAGGAGCGCGCGGTCA > 2:487206/1‑58 GCCGCGGCCATCAGGCGCAGGGTCAGCGAGGAGCGCGCGGTCATGTTCATGCCTTGCCCGGACGGCGCAGGTGCCAGTCGGTCGCCTGCTGGAACGCGTGCGCGGTCTGCAGCAGGCGCGCCTCGTCGAAGTAG < 1:380905/134‑1 GTCCGGGCAAGGCATGAACATGACCGCGCGCTCCTCGCTGACCCTGCGCCTGATGGCCGCGGCCGCGCTCGCCGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260479/124304‑124227 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcggcCATCAGGCGCAGGGTCAGCGAGGAGCGCGCGGTCATGTTCATGCCTTGCCCGGACGGCGCAGGTGCCAGTCGGTCGCCTGCTGGAACGCGTGCGCGGTCTGCAGCAGGCGCGCCTCGTCGAAGTAG > AM260479/124250‑124375 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |