New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	124227 =	15 (0.560)	4 (0.160)	4/192	1.9	25.1%	coding (59/471 nt)	h16_A0110	conserved hypothetical protein
	?	AM260479	124250 =	10 (0.410)					coding (36/471 nt)	h16_A0110	conserved hypothetical protein

AGCTGGGCGTCTTCGCGGAAGCCGTCTTCCTCGGTGCGGCGGCAGTCGCCGGCCAGGTCGATGTCGCGGCTGGCGATTGGAGCGGGCCGGCCCAGCCCGCCCGGCAGCGGGATGCAGCCGGCCACCGCCGCGGCGAGCGCGGCCGCGGCCATCAGGCGCAGGGTCAGCGAGGAGCGCGCGGTCATGTTCATGCCTTGCCCGGACGGCGCAGGTGCCAGTCGGTCGCCTGCTGGAACGCG  >  AM260479/124101‑124339                                                                                                                               |                                                                                                                 ctacttcgacgaggcgcgcctgctgcagaccgcgcacgcgttccagcaggcgaccgactggcacctgcgccgtccgggcaaggcatgaacatgaccgcgcgctcctcgctgaccctgcgcctgatgGCCgcggc                                                                                                           <  1:380905‑M1/8‑1 (MQ=255)               gcgGAAGCCGTCTTCCTCGGTGCGGCGGCAGTCGCCGGCCAGGTCGATGTCGCGGCTGGCGATTGGAGCGGGCCGGCCCAGCCCGCCCGGCAGCGGGATGCAGCCGGCCACCGCCGCGGCGAGcgcggccgcgg                                                                                             >  2:563441/1‑134 (MQ=255)                     gCCGTCTTCCTCGGTGCGGCGGCAGTCGCC‑GCCAGGTCGATGTCGCGGCTGGCGATTGGAGCGGGCCGGCCCAGCCCGCCCGGCAGCGGGATGCAGCCGGCCACCGCCGCGGCGAGcgcggccgcgg                                                                                             >  1:201206/1‑127 (MQ=255)                     gCCGTCTTCCTCGGTGCGGCGGCAGTCGCC‑GCCAGGTCGATGTCGCGGCTGGCGATTGGAGCGGGCCGGCCCAGCCCGCCCGGCAGCGGGATGCAGCCGGCCACCGCCGCGGCGAGcgcggccgcgg                                                                                             <  2:201206/127‑1 (MQ=255)                                       gcggcAGTCGCCGGCCAGGTCGATGTCGCGGCTGGCGATTGGAGCGGGCCGGCCCAGCCCGCCCGGCAGCGGGATGCAGCCGGCCACCGCCGCGGCGAGcgcg                                                                                                    <  2:1028851/103‑1 (MQ=255)                                       gcggcAGTCGCCGGCCAGGTCGATGTCGCGGCTGGCGATTGGAGCGGGCCGGCCCAGCCCGCCCGGCAGCGGGATGCAGCCGGCCACCGCCGCGGCGAGcgcg                                                                                                    >  1:1028851/1‑103 (MQ=255)                                       gcggcAGTCGCCGGCCAGGTCGATGTCGCGGCTGGCGATTGGAGCGGGCCGGCCCAGCCCGCCCGGCAGCGGGATGCAGCCGGCCACCGCCGCGGCGAGCGCGGCCGCGGCCATCAGGCGCAGGGTCAGCgagg                                                                     <  1:563441/134‑1 (MQ=255)                                       gcggcAGTCGCCGGCCAGGTCGATGTCGCGGCTGGCGATTGGAGCGGGCCGGCCCAGCCCGCCCGGCAGCGGGATGCAGCCGGCCACCGCCGCGGCGAGCGCGGCCGCGGCCATCAGGCGCAGGGTCAGCgag                                                                      >  1:729195/1‑133 (MQ=255)                                                 ccGGCCAGGTCGATGTCGCGGCTGGCGATTGGAGCGGGCCGGCCCAGCCCGCCCGGCAGCGGGATGCAGCCGTCCACCGCCGCGGCGAGCGCGGCCGCGGCCATCAGGCGCAGGGTCAGCGAGGAGCGCGCGGt                                                           >  2:318862/1‑134 (MQ=255)                                                                                            tgaccgcgcgctcctcgctgaccctgcgcctgatgGCCGCGGCGAGcgcggccgcggc                                                                                            <  1:487206‑M1/23‑1 (MQ=255)                                                                                            tgaccgcgcgctcctcgctgaccctgcgcctgatgGCCGCGGCGAGcgcggccgcggc                                                                                            >  2:487206‑M1/36‑58 (MQ=255)                                                                                                        gCAGCGGGATGCAGCCGGCCACCGCCGCGGCGAGCGCGGCCGCGGCCATCAGGCGCAGGGTCAGCGAGGAGCGCGCGGTCATGTTCATGCCTTGCCCGGACGGCGCAGGTGCCAGTCGGGCGCCTGCTGGAAcg    >  1:505404/1‑134 (MQ=255)                                                                                                          aGCGGGATGCAGCCGGCCACCGCCGCGGCGAGCGCGGCCGCGGCCATCAGGCGCAGGGTCAGCGAGGAGCGCGCGGTCATGTTCATGCCTTGCCCGGACGGCGCAGGTGCCAGTCGGTCGCCTGCTGGAAcgcg  <  1:709877/134‑1 (MQ=255)                                                                                                          aGCGGGATGCAGCCGGCCACCGCCGCGGCGAGCGCGGCCGCGGCCATCAGGCGCAGGGTCAGCGAGGAGCGCGCGGTCATGTTCATGCCTTGCCCGGACGGCGCAGGTGCCAGTCGGTCGCCTGCTGGAAcgcg  <  1:303358/134‑1 (MQ=255)                                                                                                                aTGCAGCCGGCCACCGCCGCGGCGAGCGCGGCCGCGGCCATCAGGCGCAGGGTCAGCGAGGAGCGCGCGGTCATGTTCATGCCTTGCCCGGACGGCGCAGGTGCCAgtcgg                   >  1:973208/1‑111 (MQ=255)                                                                                                                aTGCAGCCGGCCACCGCCGCGGCGAGCGCGGCCGCGGCCATCAGGCGCAGGGTCAGCGAGGAGCGCGCGGTCACGTTCATGCCTTGCCCGGACGGCGCAGGTGCCAgtcgg                   <  2:973208/111‑1 (MQ=255)                                                                                                                     gcgcctgatgGCCGCGGCGAGCGCGGCCGCGGCCATCAGGCGCAGGGTCAGCGAGGAGCGCGCGGTCATGTTCATGCCTTGCCCGGAc                                     >  1:714362‑M1/11‑88 (MQ=255)                                                                                                                     gcgcctgatgGCCGCGGCGAGCGCGGCCGCGGCCATCAGGCGCAGGGTCAGCGAGGAGCGCGCGGTCATGTTCATGCCTTGCCCGGAc                                     <  2:714362‑M1/78‑1 (MQ=255)                                                                                                                             ccgccgCGGCGAGCGCGGCCGCGGCCATCAGGCGCAGGGTCAGCgaggag                                                                   <  2:24283/50‑1 (MQ=255)                                                                                                                             ccgccgCGGCGAGCGCGGCCGCGGCCATCAGGCGCAGGGTCAGCgaggag                                                                   >  1:24283/1‑50 (MQ=255)                                                                                                                               |                                                                                                                 AGCTGGGCGTCTTCGCGGAAGCCGTCTTCCTCGGTGCGGCGGCAGTCGCCGGCCAGGTCGATGTCGCGGCTGGCGATTGGAGCGGGCCGGCCCAGCCCGCCCGGCAGCGGGATGCAGCCGGCCACCGCCGCGGCGAGCGCGGCCGCGGCCATCAGGCGCAGGGTCAGCGAGGAGCGCGCGGTCATGTTCATGCCTTGCCCGGACGGCGCAGGTGCCAGTCGGTCGCCTGCTGGAACGCG  >  AM260479/124101‑124339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.