New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	124227 =	15 (0.560)	4 (0.160)	4/192	1.9	25.1%	coding (59/471 nt)	h16_A0110	conserved hypothetical protein
	?	AM260479	124250 =	10 (0.410)					coding (36/471 nt)	h16_A0110	conserved hypothetical protein

GCGGCAGTCGCCGGCCAGGTCGATGTCGCGGCTGGCGATTGGAGCGGGCCGGCCCAGCCCGCCCGGCAGCGGGATGCAGCCGGCCACCGCCGCGGCGAGCGCGGCCGCGGCCATCAGGCGCAGGGTCAGCGAGGAGCGCGCGGTCATGTTCATGCCTTGCCCGGACGGCGCAGGTGCCAGTCGGTCGCCTGCTGGAACGCGTGCGCGGTCTGCAGCAGGCGCGCCTCGTCGAAGTAG  >  AM260479/124139‑124375                                                                                                                |                                                                                                                              gcggcAGTCGCCGGCCAGGTCGATGTCGCGGCTGGCGATTGGAGCGGGCCGGCCCAGCCCGCCCGGCAGCGGGATGCAGCCGGCCACCGCCGCGGCGAGCGCGGCCGCGGCCATCAGGCGCAGGGTCAGCgagg                                                                                                         <  1:563441/134‑1 (MQ=255) gcggcAGTCGCCGGCCAGGTCGATGTCGCGGCTGGCGATTGGAGCGGGCCGGCCCAGCCCGCCCGGCAGCGGGATGCAGCCGGCCACCGCCGCGGCGAGCGCGGCCGCGGCCATCAGGCGCAGGGTCAGCgag                                                                                                          >  1:729195/1‑133 (MQ=255)           ccGGCCAGGTCGATGTCGCGGCTGGCGATTGGAGCGGGCCGGCCCAGCCCGCCCGGCAGCGGGATGCAGCCGTCCACCGCCGCGGCGAGCGCGGCCGCGGCCATCAGGCGCAGGGTCAGCGAGGAGCGCGCGGt                                                                                               >  2:318862/1‑134 (MQ=255)                                  gtccgggcaaggcatgaacatgaccgcgcgctcctcgctgaccctgcgcctgatggccgcggccgcgctcgccgcggcCATCAGgcgc                                                                                                                      <  2:714362‑M2/10‑1 (MQ=255)                                  gtccgggcaaggcatgaacatgaccgcgcgctcctcgctgaccctgcgcctgatggccgcggccgcgctcgccgcggcCATCAGgcgc                                                                                                                      >  1:714362‑M2/79‑88 (MQ=255)                                                                  gCAGCGGGATGCAGCCGGCCACCGCCGCGGCGAGCGCGGCCGCGGCCATCAGGCGCAGGGTCAGCGAGGAGCGCGCGGTCATGTTCATGCCTTGCCCGGACGGCGCAGGTGCCAGTCGGGCGCCTGCTGGAAcg                                        >  1:505404/1‑134 (MQ=255)                                                                    aGCGGGATGCAGCCGGCCACCGCCGCGGCGAGCGCGGCCGCGGCCATCAGGCGCAGGGTCAGCGAGGAGCGCGCGGTCATGTTCATGCCTTGCCCGGACGGCGCAGGTGCCAGTCGGTCGCCTGCTGGAAcgcg                                      <  1:303358/134‑1 (MQ=255)                                                                    aGCGGGATGCAGCCGGCCACCGCCGCGGCGAGCGCGGCCGCGGCCATCAGGCGCAGGGTCAGCGAGGAGCGCGCGGTCATGTTCATGCCTTGCCCGGACGGCGCAGGTGCCAGTCGGTCGCCTGCTGGAAcgcg                                      <  1:709877/134‑1 (MQ=255)                                                                          aTGCAGCCGGCCACCGCCGCGGCGAGCGCGGCCGCGGCCATCAGGCGCAGGGTCAGCGAGGAGCGCGCGGTCATGTTCATGCCTTGCCCGGACGGCGCAGGTGCCAgtcgg                                                       >  1:973208/1‑111 (MQ=255)                                                                          aTGCAGCCGGCCACCGCCGCGGCGAGCGCGGCCGCGGCCATCAGGCGCAGGGTCAGCGAGGAGCGCGCGGTCACGTTCATGCCTTGCCCGGACGGCGCAGGTGCCAgtcgg                                                       <  2:973208/111‑1 (MQ=255)                                                                               gcgcctgatgGCCGCGGCGAGCGCGGCCGCGGCCATCAGGCGCAGGGTCAGCGAGGAGCGCGCGGTCATGTTCATGCCTTGCCCGGAc                                                                         >  1:714362‑M1/11‑88 (MQ=255)                                                                               gcgcctgatgGCCGCGGCGAGCGCGGCCGCGGCCATCAGGCGCAGGGTCAGCGAGGAGCGCGCGGTCATGTTCATGCCTTGCCCGGAc                                                                         <  2:714362‑M1/78‑1 (MQ=255)                                                                                       ccgccgCGGCGAGCGCGGCCGCGGCCATCAGGCGCAGGGTCAGCgaggag                                                                                                       <  2:24283/50‑1 (MQ=255)                                                                                       ccgccgCGGCGAGCGCGGCCGCGGCCATCAGGCGCAGGGTCAGCgaggag                                                                                                       >  1:24283/1‑50 (MQ=255)                                                                                         gccgcggccgcgctcgccgcggcCATCAGGCGCAGGGTCAGCGAGGAGCGCGCGGTCa                                                                                             <  1:487206‑M2/35‑1 (MQ=255)                                                                                         gccgcggccgcgctcgccgcggcCATCAGGCGCAGGGTCAGCGAGGAGCGCGCGGTCa                                                                                             >  2:487206‑M2/24‑58 (MQ=255)                                                                                                        gccgcggcCATCAGGCGCAGGGTCAGCGAGGAGCGCGCGGTCATGTTCATGCCTTGCCCGGACGGCGCAGGTGCCAGTCGGTCGCCTGCTGGAACGCGTGCGCGGTCTGCAGCAGGCGCGCCTCGTCGAagtag  <  1:380905‑M2/126‑1 (MQ=255)                                                                                                                |                                                                                                                              GCGGCAGTCGCCGGCCAGGTCGATGTCGCGGCTGGCGATTGGAGCGGGCCGGCCCAGCCCGCCCGGCAGCGGGATGCAGCCGGCCACCGCCGCGGCGAGCGCGGCCGCGGCCATCAGGCGCAGGGTCAGCGAGGAGCGCGCGGTCATGTTCATGCCTTGCCCGGACGGCGCAGGTGCCAGTCGGTCGCCTGCTGGAACGCGTGCGCGGTCTGCAGCAGGCGCGCCTCGTCGAAGTAG  >  AM260479/124139‑124375

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.