Predicted mutation
evidence seq id position mutation annotation gene description
MC JC AM260479 973,838 Δ1,320 bp [h16_A0881]h16_A0882 [h16_A0881], h16_A0882

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ AM260479 973838–974897 975157 261–1320 22 [0] [0] 22 [h16_A0881]–h16_A0882 [h16_A0881],h16_A0882

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 = 973837NA (NA)20 (0.840) 16/186 0.4 NA noncoding (2/1312 nt) ISAE1 insertion sequence ISAE1 isolog
?AM260479 975158 = NA (NA)intergenic (‑201/+329) h16_A0881/h16_A0883 ISAE1 Orf2 fusion protein/Hypothetical protein

GCTCTGGCCGCTGGGGCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/973713‑973837
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGACCTTGTCG  >  AM260479/975158‑975265
                                                                                                                                                                                                                                         
GCTCTGGCCGCTGGGGCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCA                                                                                                                      <  2:537028/117‑1
GCTCTGGCCGCTGGGGCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCA                                                                                                                      >  1:537028/1‑117
    TGGCCGCTGGGGCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCA                                                                                                                      <  2:273560/113‑1
    TGGCCGCTGGGGCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCA                                                                                                                      >  1:273560/1‑113
                       CCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGAT                                                                                                       <  2:929428/109‑1
                       CCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGAT                                                                                                       >  1:929428/1‑109
                         GATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCG                                                                            >  1:1028472/1‑134
                             ACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTC                                                                        >  2:419496/1‑134
                                   CGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTC                                                                                                                        >  1:837310/1‑80
                                   CGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTC                                                                                                                        <  2:837310/80‑1
                                     GCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAAC                                                                 >  2:685436/1‑133
                                            TTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAT                                                          <  1:419496/133‑1
                                            TTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAT                                                          <  2:530038/133‑1
                                                         CCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAG                                            <  2:1028472/134‑1
                                                                          TTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGT                                                        >  2:80660/1‑105
                                                                          TTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGT                                                        <  1:80660/105‑1
                                                                              GATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCC                       <  2:323394/134‑1
                                                                               ATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCT                      <  1:685436/134‑1
                                                                                             GCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGACC        >  1:528647/1‑134
                                                                                              CAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAT                                                          <  1:1185733/83‑1
                                                                                              CAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAT                                                          >  2:1185733/1‑83
                                                                                              CAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGG                                                                      <  2:495443/71‑1
                                                                                              CAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGG                                                                      >  1:495443/1‑71
                                                                                                   TTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGACCTTGTCG  >  2:912829/1‑134
                                                                                                   TTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACG                                                                                           >  2:1058991/1‑45
                                                                                                   TTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACG                                                                                           <  1:1058991/45‑1
                                                                                                                            CTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAT                                                          >  2:15733/1‑53
                                                                                                                            CTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAT                                                          <  1:15733/53‑1
                                                                                                                                                                                                                                         
GCTCTGGCCGCTGGGGCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/973713‑973837
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGACCTTGTCG  >  AM260479/975158‑975265

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.