| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260479 | 973,838 | Δ1,320 bp | [h16_A0881]–h16_A0882 | [h16_A0881], h16_A0882 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260479 | 973838–974897 | 975157 | 261–1320 | 22 [0] | [0] 22 | [h16_A0881]–h16_A0882 | [h16_A0881],h16_A0882 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 973837 | NA (NA) | 20 (0.840) | 16/186 | 0.4 | NA | noncoding (2/1312 nt) | ISAE1 | insertion sequence ISAE1 isolog |
| ? | AM260479 | 975158 = | NA (NA) | intergenic (‑201/+329) | h16_A0881/h16_A0883 | ISAE1 Orf2 fusion protein/Hypothetical protein | |||||
GCTCTGGCCGCTGGGGCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/973713‑973837‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGACCTTGTCG > AM260479/975158‑975265 GCTCTGGCCGCTGGGGCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCA < 2:537028/117‑1GCTCTGGCCGCTGGGGCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCA > 1:537028/1‑117 TGGCCGCTGGGGCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCA < 2:273560/113‑1 TGGCCGCTGGGGCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCA > 1:273560/1‑113 CCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGAT < 2:929428/109‑1 CCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGAT > 1:929428/1‑109 GATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCG > 1:1028472/1‑134 ACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTC > 2:419496/1‑134 CGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTC > 1:837310/1‑80 CGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTC < 2:837310/80‑1 GCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAAC > 2:685436/1‑133 TTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAT < 1:419496/133‑1 TTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAT < 2:530038/133‑1 CCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAG < 2:1028472/134‑1 TTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGT > 2:80660/1‑105 TTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGT < 1:80660/105‑1 GATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCC < 2:323394/134‑1 ATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCT < 1:685436/134‑1 GCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGACC > 1:528647/1‑134 CAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAT < 1:1185733/83‑1 CAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAT > 2:1185733/1‑83 CAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGG < 2:495443/71‑1 CAGCGTTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGG > 1:495443/1‑71 TTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGACCTTGTCG > 2:912829/1‑134 TTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACG > 2:1058991/1‑45 TTTGCGCCCACTGTTCCAAGGTTTGCTCAAGATCGACCGCCGACG < 1:1058991/45‑1 CTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAT > 2:15733/1‑53 CTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAT < 1:15733/53‑1 GCTCTGGCCGCTGGGGCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/973713‑973837‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGACCTTGTCG > AM260479/975158‑975265 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |