| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260479 | 973,838 | Δ1,320 bp | [h16_A0881]–h16_A0882 | [h16_A0881], h16_A0882 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260479 | 973838–974897 | 975157 | 261–1320 | 22 [0] | [0] 22 | [h16_A0881]–h16_A0882 | [h16_A0881],h16_A0882 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 973837 | NA (NA) | 20 (0.840) | 16/186 | 0.4 | NA | noncoding (2/1312 nt) | ISAE1 | insertion sequence ISAE1 isolog |
| ? | AM260479 | 975158 = | NA (NA) | intergenic (‑201/+329) | h16_A0881/h16_A0883 | ISAE1 Orf2 fusion protein/Hypothetical protein | |||||
ATGCGCACCGTGATCTTCCTGATCGCCGGAAAGCTCGACTTCTCCGCGATCAACCCGCATGCCGCATAACCCACTCATTTTTCAAAAGAGCCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGACCTTGTCG > AM260479/975056‑975265 | ccgatgacccagcggccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGAt < 2:929428‑M2/7‑1 (MQ=255)ccgatgacccagcggccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGAt > 1:929428‑M2/103‑109 (MQ=255) gatgacccagcggccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCg > 1:1028472‑M2/101‑134 (MQ=255) acccagcggccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTc > 2:419496‑M2/97‑134 (MQ=255) gccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAAc > 2:685436‑M2/89‑133 (MQ=255) ttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt < 1:419496‑M2/52‑1 (MQ=255) ttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt < 2:530038‑M2/52‑1 (MQ=255) ccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAg < 2:1028472‑M2/66‑1 (MQ=255) ttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGt > 2:80660‑M2/52‑105 (MQ=255) ttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGt < 1:80660‑M2/54‑1 (MQ=255) gatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGcc < 2:323394‑M2/87‑1 (MQ=255) atattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCt < 1:685436‑M2/88‑1 (MQ=255) gcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGAcc > 1:528647‑M2/33‑134 (MQ=255) cagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCgg > 1:495443‑M2/32‑71 (MQ=255) cagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCgg < 2:495443‑M2/40‑1 (MQ=255) cagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt < 1:1185733‑M2/52‑1 (MQ=255) cagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt > 2:1185733‑M2/32‑83 (MQ=255) tttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACg > 2:1058991‑M2/27‑45 (MQ=255) tttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACg < 1:1058991‑M2/19‑1 (MQ=255) tttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGACCTTGTCg > 2:912829‑M2/27‑134 (MQ=255) cTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt > 2:15733‑M2/2‑53 (MQ=255) cTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt < 1:15733‑M2/52‑1 (MQ=255) | ATGCGCACCGTGATCTTCCTGATCGCCGGAAAGCTCGACTTCTCCGCGATCAACCCGCATGCCGCATAACCCACTCATTTTTCAAAAGAGCCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGACCTTGTCG > AM260479/975056‑975265 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |