| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260479 | 973,838 | Δ1,320 bp | [h16_A0881]–h16_A0882 | [h16_A0881], h16_A0882 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260479 | 973838–974897 | 975157 | 261–1320 | 22 [0] | [0] 22 | [h16_A0881]–h16_A0882 | [h16_A0881],h16_A0882 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 973837 | NA (NA) | 20 (0.840) | 16/186 | 0.4 | NA | noncoding (2/1312 nt) | ISAE1 | insertion sequence ISAE1 isolog |
| ? | AM260479 | 975158 = | NA (NA) | intergenic (‑201/+329) | h16_A0881/h16_A0883 | ISAE1 Orf2 fusion protein/Hypothetical protein | |||||
CCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAGCGATGCATAGCAAACTGTTTGAAGCAGCCCTTGGCATAAGCGATCCGTG > AM260479/973736‑973945 | ccGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagat < 2:929428‑M1/109‑8 (MQ=255)ccGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagat > 1:929428‑M1/1‑102 (MQ=255) gATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcg > 1:1028472‑M1/1‑100 (MQ=255) aCCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtc > 2:419496‑M1/1‑96 (MQ=255) gCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaac > 2:685436‑M1/1‑88 (MQ=255) ttGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat < 1:419496‑M1/133‑53 (MQ=255) ttGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat < 2:530038‑M1/133‑53 (MQ=255) ccATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatatag < 2:1028472‑M1/134‑67 (MQ=255) ttAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgt < 1:80660‑M1/105‑55 (MQ=255) ttAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgt > 2:80660‑M1/1‑51 (MQ=255) gATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttccaggcc < 2:323394‑M1/134‑88 (MQ=255) atatTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttccaggcct < 1:685436‑M1/134‑89 (MQ=255) gcAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttccaggcctgggccagtacgacc > 1:528647‑M1/1‑32 (MQ=255) cAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat < 1:1185733‑M1/83‑53 (MQ=255) cAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat > 2:1185733‑M1/1‑31 (MQ=255) cAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcgg < 2:495443‑M1/71‑41 (MQ=255) cAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcgg > 1:495443‑M1/1‑31 (MQ=255) tttGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttccaggcctgggccagtacgaccttgtcg > 2:912829‑M1/1‑26 (MQ=255) tttGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacg > 2:1058991‑M1/1‑26 (MQ=255) tttGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacg < 1:1058991‑M1/45‑20 (MQ=255) ctcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat > 2:15733‑M1/1‑1 (MQ=255) ctcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat < 1:15733‑M1/53‑53 (MQ=255) | CCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAGCGATGCATAGCAAACTGTTTGAAGCAGCCCTTGGCATAAGCGATCCGTG > AM260479/973736‑973945 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |