New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	982522 =	16 (0.600)	4 (0.170)	4/186	1.9	22.0%	coding (529/909 nt)	h16_A0889	transcriptional regulator, LysR‑family
	?	AM260479	982629 =	14 (0.590)					coding (422/909 nt)	h16_A0889	transcriptional regulator, LysR‑family

ATCTGCGCCTCACCCGCCTACCTGCAGCGCCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/982555‑982522 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcgccacgTCGATGCTGGCATCGACCAGTCCGATCACCTGGTCGGTCAGGCGCAGGTCAAGCGCGATATCGGGGTAGGCGGCAAGGAATTCGGGCAGCGCCGGCGAGACATGCTGGCGCCCGAAGGACGCCGGCGCGGT  >  AM260479/982629‑982759                                                                                                                                                                       ATCTGCGCCTCACCCGCCTACCTGCAGCGCCACGTCGATGCTGGCATCGACCAGTCCGATCACCTGGTCGGTCAGGCGCA                                                                                       >  1:749577/1‑80 ATCTGCGCCTCACCCGCCTACCTGCAGCGCCACGTCGATGCTGGCATCGACCAGTCCGATCACCTGGTCGGTCAGGCGCA                                                                                       <  2:749577/80‑1         CTCACCCGCCTACCTGCAGCGCCACGTCGATGCTGGCATCGACCAGTCCGATCACCTGGTCGGTCA                                                                                             <  1:429971/66‑1         CTCACCCGCCTACCTGCAGCGCCACGTCGATGCTGGCATCGACCAGTCCGATCACCTGGTCGGTCA                                                                                             >  2:429971/1‑66                              CCACGTCGATGCTGGCATCGACCAGTCCGATCACCTGGTCGGTCAGGCGCAGGTCAAGCGCGATATCGGGGTAGGCGGCAAGGAATTCGGGCAGCGCCGGCGAGACATGCTGGCGCCCGAAGGACGCCGGCGCG    >  2:274499/1‑134                                ACGTCGATGCTGGCATCGACCAGTCCGATCACCTGGTCGGTCAGGCGCAGATCAAGCGCGATATCGGGGTAGGCGGCAAGGAATTCGGGCAGCGCCGGCGAGACATGCTGGCGCCCGAAGGACGCCGGCGCGGT  >  1:12083/1‑134                                                                                                                                                                       ATCTGCGCCTCACCCGCCTACCTGCAGCGCCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/982555‑982522 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcgccacgTCGATGCTGGCATCGACCAGTCCGATCACCTGGTCGGTCAGGCGCAGGTCAAGCGCGATATCGGGGTAGGCGGCAAGGAATTCGGGCAGCGCCGGCGAGACATGCTGGCGCCCGAAGGACGCCGGCGCGGT  >  AM260479/982629‑982759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.