| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | 982522 = | 16 (0.600) | 4 (0.170) | 4/186 | 1.9 | 22.0% | coding (529/909 nt) | h16_A0889 | transcriptional regulator, LysR‑family |
| ? | AM260479 | 982629 = | 14 (0.590) | coding (422/909 nt) | h16_A0889 | transcriptional regulator, LysR‑family | |||||
GTCCGGGTGGCGCGGCACGCCGTGGCGCTGCAGGTAGGCGGGTGAGGCGCAGATCACGCGGTGGCTGGGTGCGAGCGCGCGTGCCACCAGCGTGGAATCCGGCAGCACGCCCATGCGCAGCGCCACGTCGATGCTGGCATCGACCAGTCCGATCACCTGGTCGGTCAGGCGCAGGTCAAGCGCGATATCGGGGTAGGCGGCAAGGAATTCGGGCAGCGCCGGCGAGACATGCTGGCGCCCGAAGGACGCCGGCGCGGT > AM260479/982502‑982759 | gtcCGGGTGGCGCGGCACGCCGTGGCGCTGCAGGTAGGCGGGTGAGGCGCAGATCACGCGGTGGCTGGGTGCGAGCGCGCGTGCCACCAGCGTGGAATCCGGCAGCACGCCCATGCGCAGCGCCACGTCGATGc > 1:942313/1‑134 (MQ=255) tGGCGCGGCACGCCGTGGCGCTGCAGGTAGGCGGGTGAGGCGCAGATCACGCGGTGGCTGGGTGCGAGCGCGCGTGCCACCAGCGTGGAATCCGGCAGCACGCCCATGCGCAGCGCCACGTCGATGCTGGCATc < 2:1138240/134‑1 (MQ=255) gcgcGGCACGCCGTGGCGCTGCAGGTAGGCGGGTGAGGCGCAGATCACGCGGTGGCTGGGTGCGAGCGCGCGTGCCACCAGCGTGGAATCCGGCAGCACGCCCATGCGCAGCGCCACGTCGATGCTGGCATCg < 1:391344/133‑1 (MQ=255) aGGCGCAGATCACGCGGTGGCTGGGTGCGAGCGCGCGTGCCACCAGCGTGGAATCCGGCAGCACGCCCATGCGCAGCGCCACGTCGATGCTGGCATCGACCAGTCCGATCACCTGGTCGGTCAGGCGCAGGTCa < 2:921109/134‑1 (MQ=255) cgcgGTGGCTGGGTGCGAGCGCGCGTGCCACCAGCGTGGAATCCGGCAGCACGCCCATGCGCAGCGCCACGTCGATGCTGGCATc < 1:1043358/85‑1 (MQ=255) cgcgGTGGCTGGGTGCGAGCGCGCGTGCCACCAGCGTGGAATCCGGCAGCACGCCCATGCGCAGCGCCACGTCGATGCTGGCATc > 2:1043358/1‑85 (MQ=255) gTGGCTGGGTGCGAGCGCGCGTGCCACCAGCGTGGAATCCGGCAGCACGCCCATGCGCAGCGCCACGTCGATGCTGGCATCGACCAGTCCGATCACCTGGTCGGTCAGGCGCAGGTCAAGCGCGATATCgggg > 1:219092/1‑133 (MQ=255) tGGCTGGGTGCGAGCGCGCGTGCCACCAGCGTGGAATCCGGCAGCACGCCCATGCGCAGCGCCACGTCGATGCTGGCATCGACCAGTCCGATCACCTGGTCGGTCAGGCGCAGGTCAAGCGCGATATCgggg > 2:412007/1‑132 (MQ=255) cgTGCCACCAGCGTGGAATCCGGCAGCACGCCCATGCGCAGCGCCACGTCGATGCTGGCATCGACCAGTCCGATCACCTGGTCGGTCAGGCGCAGGTCAAGCGCGATATCGGGGTAGGCGGCAAGGAATTCggg < 2:219092/134‑1 (MQ=255) atctgcgcctcacccgcctacctgcagcgccacgTCGATGCTGGCATCGACCAGTCCGATCACCTGGTCGGTCAGGCGCa < 2:749577‑M2/46‑1 (MQ=255) atctgcgcctcacccgcctacctgcagcgccacgTCGATGCTGGCATCGACCAGTCCGATCACCTGGTCGGTCAGGCGCa > 1:749577‑M2/35‑80 (MQ=255) aTCCGGCAGCACGCCCATGCGCAGCGCCACGTCGATGCTGGCATCGACCAGTCCGATCACCTGGTCGGTCAGGCGCAGGTCAAGCGCGATATCGGGGTAGGCGGCAAGGAATTCGGGCAGCGCCGGCGAGACAt > 1:316187/1‑134 (MQ=255) ccGGCAGCACGCCCATGCGCAGCGCCACGTCGATGCTGGCATCg > 2:926990/1‑44 (MQ=255) ccGGCAGCACGCCCATGCGCAGCGCCACGTCGATGCTGGCATCg > 2:530064/1‑44 (MQ=255) ccGGCAGCACGCCCATGCGCAGCGCCACGTCGATGCTGGCATCg < 1:926990/44‑1 (MQ=255) ccGGCAGCACGCCCATGCGCAGCGCCACGTCGATGCTGGCATCg < 1:530064/44‑1 (MQ=255) ctcacccgcctacctgcagcgccacgTCGATGCTGGCATCGACCAGTCCGATCACCTGGTCGGTCa > 2:429971‑M2/27‑66 (MQ=255) ctcacccgcctacctgcagcgccacgTCGATGCTGGCATCGACCAGTCCGATCACCTGGTCGGTCa < 1:429971‑M2/40‑1 (MQ=255) ccacgTCGATGCTGGCATCGACCAGTCCGATCACCTGGTCGGTCAGGCGCAGGTCAAGCGCGATATCGGGGTAGGCGGCAAGGAATTCGGGCAGCGCCGGCGAGACATGCTGGCGCCCGAAGGACGCCGGcgcg > 2:274499‑M2/6‑134 (MQ=255) acgTCGATGCTGGCATCGACCAGTCCGATCACCTGGTCGGTCAGGCGCAGATCAAGCGCGATATCGGGGTAGGCGGCAAGGAATTCGGGCAGCGCCGGCGAGACATGCTGGCGCCCGAAGGACGCCGGCGCGGt > 1:12083‑M2/4‑134 (MQ=255) | GTCCGGGTGGCGCGGCACGCCGTGGCGCTGCAGGTAGGCGGGTGAGGCGCAGATCACGCGGTGGCTGGGTGCGAGCGCGCGTGCCACCAGCGTGGAATCCGGCAGCACGCCCATGCGCAGCGCCACGTCGATGCTGGCATCGACCAGTCCGATCACCTGGTCGGTCAGGCGCAGGTCAAGCGCGATATCGGGGTAGGCGGCAAGGAATTCGGGCAGCGCCGGCGAGACATGCTGGCGCCCGAAGGACGCCGGCGCGGT > AM260479/982502‑982759 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |