New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	982522 =	16 (0.600)	4 (0.170)	4/186	1.9	22.0%	coding (529/909 nt)	h16_A0889	transcriptional regulator, LysR‑family
	?	AM260479	982629 =	14 (0.590)					coding (422/909 nt)	h16_A0889	transcriptional regulator, LysR‑family

GTTATCCACGCGCAGGTTGCCGCGCACGTGCACCACGGTCTCGCCCAGCGGCGTATTGAAGCGCCACGCCGACTGGTCGGCCAGCACCAGGCAGTTGTGCTGGCGCAGGTCGTCCGGGTGGCGCGGCACGCCGTGGCGCTGCAGGTAGGCGGGTGAGGCGCAGATCACGCGGTGGCTGGGTGCGAGCGCGCGTGCCACCAGCGTGGAATCCGGCAGCACGCCCATGCGCAGCGCCACGTCGATGCTGGCATCG  >  AM260479/982391‑982643                                                                                                                                    |                                                                                                                          accgcgccggcgtccttcgggcgccagcatgtctcgccggcgctgcccgaattccttgccgcctaccccgatatcgcgcttgatctgcgcctgaccgaccaggtgatcggactggtcgatgccagcatcgaCGt                                                                                                                         >  1:12083‑M1/132‑134 (MQ=255)   cgcgccggcgtccttcgggcgccagcatgtctcgccggcgctgcccgaattccttgccgcctaccccgatatcgcgcttgacctgcgcctgaccgaccaggtgatcggactggtcgatgccagcatcgaCGTgg                                                                                                                       >  2:274499‑M1/130‑134 (MQ=255)                        gcACGTGCACCACGGTCTCGCCCAGCGGCGTATTGAAGCGCCACGCCGACTGGTCGGCCAGCACCAGGCAGTTGTGCTGGCGCAGGTCGTCCGGGTGGCGCGGCACGCCGTGGCGCTGCAGGTAGGCGGGTGAg                                                                                                  <  1:756606/134‑1 (MQ=255)                            gTGCACCACGGTCTCGCCCAGCGGCGTATTGAAGCGCCACGCCGACTGGTCGGCCAGCACCAGGCAGTTGTGCTGGCGCAGGTCGTCCGGGTGGCGCGGCACGCCGTGGCGCTGCAGGTAGGCGGGTGAGgcgc                                                                                              <  2:970807/134‑1 (MQ=255)                              gCACCACGGTCTCGCCCAGCGGCGTATTGAAGCGCCACGCCGACTGGTCGGCCAGCACCAGGCAGTTGTGCTGGCGCAGGTCGTCCGGGTGGCGCGGCACGCCGTGGCGCTGCAGGTAGGCGGGTGAGgcg                                                                                               >  1:830304/1‑131 (MQ=255)                                  cacGGTCTCGCCCAGCGGCGTATTGAAGCGCCACGCCGACTGGTCGGCCAGCACCAGGCAGTTGTGCTGGCGCAGGTCGTCCGGGTGGCGCGGCACGCCGTGGCGCTGCAGGTAGGCGGGTGAGGCGCAGATCa                                                                                        <  2:830304/134‑1 (MQ=255)                                                        ttGAAGCGCCACGCCGACTGGTCGGCCAGCACCAGGCAGTTGTGCTGGCGCAGGTCGTCCGGGTGGCGCGGCACGCCGTGGCGCTGCAGGTAGGCGGGTGAGGCGCAGATCACGCGGTGGCTGGGTGCGAgcg                                                                   <  2:332707/133‑1 (MQ=255)                                                                    gCCGACTGGTCGGCCAGCACCAGGCAGTTGTGCTGGCGCAGGTCGTCCGGGTGGCGCGGCACGCCGTGGCGCTGCAGGTAGGCGGGTGAGGCGCAGATCACGCGGt                                                                                  >  1:4748/1‑106 (MQ=255)                                                                    gCCGACTGGTCGGCCAGCACCAGGCAGTTGTGCTGGCGCAGGTCGTCCGGGTGGCGCGGCACGCCGTGGCGCTGCAGGTAGGCGGGTGAGGCGCAGATCACGCGGTGGCTGGGTGCGAGCGCGCGTGCCACCAg                                                      >  1:1138240/1‑134 (MQ=255)                                                                    gCCGACTGGTCGGCCAGCACCAGGCAGTTGTGCTGGCGCAGGTCGTCCGGGTGGCGCGGCACGCCGTGGCGCGGCAGGTAGGCGGGTGAGGCGCAGATCACGCGGt                                                                                  <  2:4748/106‑1 (MQ=255)                                                                                gCCAGCACCAGGCAGTTGTGCTGGCGCAGGTCGTCCGGGTGGCGCGGCACGCCGTGGCGCTGCAGGTAGGCGGGTGAGGCGCAGATCACGCGGTGGCTGGGTGCGAGCGCGCGTGCCACCAGCGTGGAATCCgg                                          >  1:921109/1‑134 (MQ=255)                                                                                      tgcgcctgaccgaccaggtgatcggactggtcgatgccagcatcgaCGTGGCGCTGCAGGTAGGCGGGTGAGGCGCAGAt                                                                                          >  1:749577‑M1/47‑80 (MQ=255)                                                                                      tgcgcctgaccgaccaggtgatcggactggtcgatgccagcatcgaCGTGGCGCTGCAGGTAGGCGGGTGAGGCGCAGAt                                                                                          <  2:749577‑M1/34‑1 (MQ=255)                                                                                            tgaccgaccaggtgatcggactggtcgatgccagcatcgaCGTGGCGCTGCAGGTAGGCGGGTGAg                                                                                                  <  1:429971‑M1/26‑1 (MQ=255)                                                                                            tgaccgaccaggtgatcggactggtcgatgccagcatcgaCGTGGCGCTGCAGGTAGGCGGGTGAg                                                                                                  >  2:429971‑M1/41‑66 (MQ=255)                                                                                                   gCTGGCGCAGGTCGTCCGGGTGGCGCGGCACGCCGTGGCGCTGCAGGTAg                                                                                                           <  1:492048/50‑1 (MQ=255)                                                                                                   gCTGGCGCAGGTCGTCCGGGTGGCGCGGCACGCCGTGGCGCTGCAGGTAg                                                                                                           >  2:492048/1‑50 (MQ=255)                                                                                                             gtcgtcCGGGTGGCGCGGCACGCCGTGGCGCTGCAGGTAGGCGGGTGAGGCGCAGATCACGCGGTGGCTGGGTGCGAGCGCGCGTGCCACCAGCGTGGAATCCGGCAGCACGCCCa                               <  2:73578/116‑1 (MQ=255)                                                                                                             gtcgtcCGGGTGGCGCGGCACGCCGTGGCGCTGCAGGTAGGCGGGTGAGGCGCAGATCACGCGGTGGCTGGGTGCGAGCGCGCGTGCCACCAGCGTGGAATCCGGCAGCACGCCCa                               >  1:73578/1‑116 (MQ=255)                                                                                                                gtcCGGGTGGCGCGGCACGCCGTGGCGCTGCAGGTAGGCGGGTGAGGCGCAGATCACGCGGTGGCTGGGTGCGAGCGCGCGTGCCACCAGCGTGGAATCCGGCAGCACGCCCATGCGCAGCGCCACGTCGATGc          >  1:942313/1‑134 (MQ=255)                                                                                                                       tGGCGCGGCACGCCGTGGCGCTGCAGGTAGGCGGGTGAGGCGCAGATCACGCGGTGGCTGGGTGCGAGCGCGCGTGCCACCAGCGTGGAATCCGGCAGCACGCCCATGCGCAGCGCCACGTCGATGCTGGCATc   <  2:1138240/134‑1 (MQ=255)                                                                                                                         gcgcGGCACGCCGTGGCGCTGCAGGTAGGCGGGTGAGGCGCAGATCACGCGGTGGCTGGGTGCGAGCGCGCGTGCCACCAGCGTGGAATCCGGCAGCACGCCCATGCGCAGCGCCACGTCGATGCTGGCATCg  <  1:391344/133‑1 (MQ=255)                                                                                                                                    |                                                                                                                          GTTATCCACGCGCAGGTTGCCGCGCACGTGCACCACGGTCTCGCCCAGCGGCGTATTGAAGCGCCACGCCGACTGGTCGGCCAGCACCAGGCAGTTGTGCTGGCGCAGGTCGTCCGGGTGGCGCGGCACGCCGTGGCGCTGCAGGTAGGCGGGTGAGGCGCAGATCACGCGGTGGCTGGGTGCGAGCGCGCGTGCCACCAGCGTGGAATCCGGCAGCACGCCCATGCGCAGCGCCACGTCGATGCTGGCATCG  >  AM260479/982391‑982643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.