New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 1235505	16 (0.600)	4 (0.160)	4/194	1.9	21.7%	coding (519/1755 nt)	h16_A1131	ATPase DNA repair
	?	AM260479	= 1235522	14 (0.560)					coding (502/1755 nt)	h16_A1131	ATPase DNA repair

CCGGTTGTACTCGGACTGGATCTCTTCCCATTCGCCCGGCTGCGGGTTGAGCTTGTCCAGTTCGCCGACCTGCCATTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/1235367‑1235505 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgcGCCTGGCGTGCCTGCGTGCGCCAGCGCGAGGCGGTGGAACACCAGTCGCGCGAGATGCAGCTCGAACGCGAGCGGCTGGAATGGCAGGTCGGCGAACTGGACAAGCTCAACCCGCAGCCGGGCGAATG  <  AM260479/1235522‑1235395                                                                                                                                                                                                                                                                             CCGGTTGTACTCGGACTGGATCTCTTCCCATTCGCCCGGCTGCGGGTTGAGCTTGTCCAGTTCGCCGACCTGCCATTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCT                                                                                                                                       >  1:327881/1‑134     TTGTACTCGGACTGGATCTCTTCCCATTCGCCCGGCTGCGGGTTGAGCTTGTCCAGTTCGCCGACCTGCCATTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCG                                                                                                                                   <  2:64535/134‑1                                                                 CCGACCTGCCATTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCGCCTGGC                                                                                                                           <  1:570496/82‑1                                                                 CCGACCTGCCATTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCGCCTGGC                                                                                                                           >  2:570496/1‑82                                                                                        GCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCGCCTGGCGTGCCTGCGTGCGCCCGCGCGAGGCGGTGGAACACCAGCCGCGCGAGATGCAGCTCGAACGCGAGCGGCTGGAAT                                                >  2:393595/1‑134                                                                                                          GCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCGCCTGGCGTGCCTGCGTGCGCCAGCGCGAGGCGGTGGAACACCAGTCGCGCGAGATGCAGCTCGAACGCGAGCGGCTGGAATGGCAGGTCGGCGAAC                                 <  1:393595/131‑1                                                                                                                                        GCGCGCCTGGCGTGCCTGCGTGCGCCAGCGCGAGGCGGTGGAACACCAGTCGCGCGAGATGCAGCTCGAACGCGAGCGGCTGGAATGGCAGGTCGGCGAACTGGACAAGCTCAACCCGCAGCCGGGCGAATG  <  1:66183/132‑1                                                                                                                                                                                                                                                                             CCGGTTGTACTCGGACTGGATCTCTTCCCATTCGCCCGGCTGCGGGTTGAGCTTGTCCAGTTCGCCGACCTGCCATTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/1235367‑1235505 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgcGCCTGGCGTGCCTGCGTGCGCCAGCGCGAGGCGGTGGAACACCAGTCGCGCGAGATGCAGCTCGAACGCGAGCGGCTGGAATGGCAGGTCGGCGAACTGGACAAGCTCAACCCGCAGCCGGGCGAATG  <  AM260479/1235522‑1235395

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.