New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 1235505	16 (0.600)	4 (0.160)	4/194	1.9	21.7%	coding (519/1755 nt)	h16_A1131	ATPase DNA repair
	?	AM260479	= 1235522	14 (0.560)					coding (502/1755 nt)	h16_A1131	ATPase DNA repair

ACTGGATCTCTTCCCATTCGCCCGGCTGCGGGTTGAGCTTGTCCAGTTCGCCGACCTGCCATTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTCGGCCACCGCGCCGGCCTGCTGGGTGAGGCCGGCGTGGGCGTCGAACAGCAGCCGCTGCGCATCGGGGCGCAGCAGCAGCTGGTGCGCGTGCTGGCCGTG  >  AM260479/1235381‑1235633                                                                                                                             |                                                                                                                                 aCTGGATCTCTTCCCATTCGCCCGGCTGCGGGTTGAGCTTGTCCAGTTCGCCGACCTGCCATTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCACGCAGGCa                                                                                                                         <  1:1174561/134‑1 (MQ=255)     gATCTCTTCCCATTCGCCCGGCTGCGGGTTGAGCTTGTCCAGTTCGCCGACCTGCCATTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCACGCAGGCACGc                                                                                                                      >  1:1042892/1‑133 (MQ=255)               cATTCGCCCGGCTGCGGGTTGAGCTTGTCCAGTTCGCCGACCTGCCATTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCACGCAGGCACGCCAGGCgcgc                                                                                                             <  1:66183‑M2/132‑5 (MQ=255)                 ttCGCCCGGCTGCGGGTTGAGCTTGTCCAGTTCGCCGACCTGCCATTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCACGCAGGCACGCCAGGCGCGCCAgg                                                                                                         <  2:327881/134‑1 (MQ=255)                     cccGGCTGCGGGTTGAGCTTGTCCAGTTCGCCGACCTGCCATTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTc                                                                                                     >  2:1098899/1‑134 (MQ=255)                             cGGGTTGAGCTTGTCCAGTTCGCCGACCTGCCATTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTCGGCCAc                                                                                               <  1:704170/132‑1 (MQ=255)                                gTTGAGCTTGTCCAGTTCGCCGACCTGCCATTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTCGGCCACCacgc                                                                                          <  1:1098899/134‑1 (MQ=255)                                              gTTCGCCGACCTGCCATTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCACGCAGGCACGCCAGGCgcgccagcgcgaggcggtggaacaccagtcgcgc                                                                               <  1:393595‑M2/131‑35 (MQ=255)                                                   ccGACCTGCCATTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCgcctggc                                                                                                                           >  2:570496‑M1/1‑75 (MQ=255)                                                   ccGACCTGCCATTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCgcctggc                                                                                                                           <  1:570496‑M1/82‑8 (MQ=255)                                                    cGACCTGCCATTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTCGGCCACCGCGCCGGCCTGCTGGGTGAGGCCg                                                                      <  2:1042892/134‑1 (MQ=255)                                                             aTTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGGCTGGTGTTCCACCGCCTCGCGCGGGCGCACGCAGGCACGCCAGGCgcgccagcgcgaggcggtggaacaccagtcgcgcgagatgcagctcgaacgc                                                             >  2:393595‑M2/1‑82 (MQ=255)                                                                         cgcgTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTCGGCCACCGCGCCGGCCTGCTGGGTGAGGCCGGCGTGGGCGTCGAACagcagc                                                 >  2:320613/1‑134 (MQ=255)                                                                          gcgTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCgcctggcgtgcctgcgtgcgcccgcgcgaggcggtggaacaccagccgcgcgagatgcagctcgaacgcgagcggctggaat                                                >  2:393595‑M1/1‑52 (MQ=255)                                                                                      cATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTCGGCCACCGCGCCGGCCTGCTGGGTGAGGCCGGCGTGGGCGTCGAACAGCAGCCGCTGCGCATCgg                                    <  2:66183/134‑1 (MQ=255)                                                                                            gcgcgACTGGTGTTCCACCGCCTCGCGCTGGCGCgcctggcgtgcctgcgtgcgccagcgcgaggcggtggaacaccagtcgcgcgagatgcagctcgaacgcgagcggctggaatggcaggtcggcgaac                                 <  1:393595‑M1/131‑98 (MQ=255)                                                                                                gACTGGTGTTCCACCGCCTCGCGCTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTCGGCCACCGCGCCGGCCTGCTGGGTGAGGCCGGCGTGGGCGTCGAACAGCAGCCGCTGCGCATCGGGGCgcagcag                          >  1:575494/1‑134 (MQ=255)                                                                                                                   cgcgCTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTCGGCCACCGCGCCGGCctgct                                                                                 >  1:707282/1‑60 (MQ=255)                                                                                                                   cgcgCTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTCGGCCACCGCGCCGGCctgct                                                                                 <  2:707282/60‑1 (MQ=255)                                                                                                                    gcgcTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTCGGCCACCGCGCCgg                                                                                       <  2:352401/53‑1 (MQ=255)                                                                                                                    gcgcTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTCGGCCACCGCGCCgg                                                                                       >  1:352401/1‑53 (MQ=255)                                                                                                                    gcgcTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTCGGCCACCGCGCCGGCCTGCTGGGTGAGGCCGGCGTGGGCGTCGAACAGCAGCCGCTGCGCATCGGGGCGCAGCAGCAGCTGGTGCGCGTGCTGGc      >  2:1008727/1‑134 (MQ=255)                                                                                                                      gcTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTCGGCCACCGCGCCGGCCTGCTGGGTGAGGCCGGCGTGGGCGTCGAACAGCAGCCGCTGCGCATCGGGGCGCAGCAGCAGCTGGTGCGCGTGCTGGCCg    >  2:923097/1‑134 (MQ=255)                                                                                                                          gcgcgcctggcgtgcctgcgtgcgccagcgcgaggcggtggaacaccagtcgcgcgagatgcagctcgaacgcgagcggctggaatggcaggtcggcgaactggacaagctcaacccgcagccgggcgaatg  <  1:66183‑M1/132‑129 (MQ=255)                                                                                                                             |                                                                                                                                 ACTGGATCTCTTCCCATTCGCCCGGCTGCGGGTTGAGCTTGTCCAGTTCGCCGACCTGCCATTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTCGGCCACCGCGCCGGCCTGCTGGGTGAGGCCGGCGTGGGCGTCGAACAGCAGCCGCTGCGCATCGGGGCGCAGCAGCAGCTGGTGCGCGTGCTGGCCGTG  >  AM260479/1235381‑1235633

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.