New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 1235505	16 (0.600)	4 (0.160)	4/194	1.9	21.7%	coding (519/1755 nt)	h16_A1131	ATPase DNA repair
	?	AM260479	= 1235522	14 (0.560)					coding (502/1755 nt)	h16_A1131	ATPase DNA repair

CATTCGCCCGGCTGCGGGTTGAGCTTGTCCAGTTCGCCGACCTGCCATTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTCGGCCACCGCGCCGGCCTGCTGGGTGAGGCCGGCGTGGGCGTCGAACAGCAGCCGCTGCGCATCGGGGCGCAGCAGCAGCTGGTGCGCGTGCTGGCCG  >  AM260479/1235395‑1235631                                                                                                                                |                                                                                                              cATTCGCCCGGCTGCGGGTTGAGCTTGTCCAGTTCGCCGACCTGCCATTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCACGCAGGCACGCCAGGCgcgc                                                                                                           <  1:66183‑M2/132‑5 (MQ=255)   ttCGCCCGGCTGCGGGTTGAGCTTGTCCAGTTCGCCGACCTGCCATTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCACGCAGGCACGCCAGGCGCGCCAgg                                                                                                       <  2:327881/134‑1 (MQ=255)       cccGGCTGCGGGTTGAGCTTGTCCAGTTCGCCGACCTGCCATTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTc                                                                                                   >  2:1098899/1‑134 (MQ=255)               cGGGTTGAGCTTGTCCAGTTCGCCGACCTGCCATTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTCGGCCAc                                                                                             <  1:704170/132‑1 (MQ=255)                  gTTGAGCTTGTCCAGTTCGCCGACCTGCCATTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTCGGCCACCacgc                                                                                        <  1:1098899/134‑1 (MQ=255)                                gTTCGCCGACCTGCCATTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCACGCAGGCACGCCAGGCgcgccagcgcgaggcggtggaacaccagtcgcgc                                                                             <  1:393595‑M2/131‑35 (MQ=255)                                      cGACCTGCCATTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTCGGCCACCGCGCCGGCCTGCTGGGTGAGGCCg                                                                    <  2:1042892/134‑1 (MQ=255)                                               aTTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGGCTGGTGTTCCACCGCCTCGCGCGGGCGCACGCAGGCACGCCAGGCgcgccagcgcgaggcggtggaacaccagtcgcgcgagatgcagctcgaacgc                                                           >  2:393595‑M2/1‑82 (MQ=255)                                                           cgcgTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTCGGCCACCGCGCCGGCCTGCTGGGTGAGGCCGGCGTGGGCGTCGAACagcagc                                               >  2:320613/1‑134 (MQ=255)                                                                        cATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTCGGCCACCGCGCCGGCCTGCTGGGTGAGGCCGGCGTGGGCGTCGAACAGCAGCCGCTGCGCATCgg                                  <  2:66183/134‑1 (MQ=255)                                                                                  gACTGGTGTTCCACCGCCTCGCGCTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTCGGCCACCGCGCCGGCCTGCTGGGTGAGGCCGGCGTGGGCGTCGAACAGCAGCCGCTGCGCATCGGGGCgcagcag                        >  1:575494/1‑134 (MQ=255)                                                                                                     cgcgCTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTCGGCCACCGCGCCGGCctgct                                                                               <  2:707282/60‑1 (MQ=255)                                                                                                     cgcgCTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTCGGCCACCGCGCCGGCctgct                                                                               >  1:707282/1‑60 (MQ=255)                                                                                                      gcgcTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTCGGCCACCGCGCCgg                                                                                     >  1:352401/1‑53 (MQ=255)                                                                                                      gcgcTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTCGGCCACCGCGCCgg                                                                                     <  2:352401/53‑1 (MQ=255)                                                                                                      gcgcTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTCGGCCACCGCGCCGGCCTGCTGGGTGAGGCCGGCGTGGGCGTCGAACAGCAGCCGCTGCGCATCGGGGCGCAGCAGCAGCTGGTGCGCGTGCTGGc    >  2:1008727/1‑134 (MQ=255)                                                                                                        gcTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTCGGCCACCGCGCCGGCCTGCTGGGTGAGGCCGGCGTGGGCGTCGAACAGCAGCCGCTGCGCATCGGGGCGCAGCAGCAGCTGGTGCGCGTGCTGGCCg  >  2:923097/1‑134 (MQ=255)                                                                                                                          gCCAGGCgcgccagcgcgaggcggtggaacaccagtcgcgcgagatgcagctcgaacgcgagcggctggaatggcaggtcgg                                    >  2:570496‑M2/1‑7 (MQ=255)                                                                                                                          gCCAGGCgcgccagcgcgaggcggtggaacaccagtcgcgcgagatgcagctcgaacgcgagcggctggaatggcaggtcgg                                    <  1:570496‑M2/82‑76 (MQ=255)                                                                                                                                |                                                                                                              CATTCGCCCGGCTGCGGGTTGAGCTTGTCCAGTTCGCCGACCTGCCATTCCAGCCGCTCGCGTTCGAGCTGCATCTCGCGCGACTGGTGTTCCACCGCCTCGCGCTGGCGCACGCAGGCACGCCAGGCGCGCCAGGCCTCGGCCACCGCGCCGGCCTGCTGGGTGAGGCCGGCGTGGGCGTCGAACAGCAGCCGCTGCGCATCGGGGCGCAGCAGCAGCTGGTGCGCGTGCTGGCCG  >  AM260479/1235395‑1235631

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.