New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	1864240 =	21 (0.790)	9 (0.520)	4/136	1.4	45.4%	intergenic (+776/‑280)	h16_A1704/h16_A1706	transcriptional regulator, LysR‑family/putative peptidase, S08A subfamily
	?	AM260479	= 1864309	8 (0.460)					intergenic (+845/‑211)	h16_A1704/h16_A1706	transcriptional regulator, LysR‑family/putative peptidase, S08A subfamily

GCGCGACCGGTTCCCGTGAAATGCGGAAAATTTTCCATCAGATCAAGAACGAACGGACAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/1864402‑1864240 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagctctcagctctcagctctcagctctcagctctcAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCGAAGTCTAGGATGCGAAGTGGCAAACTTCATGCGGACTGCGTGCGAAATGACAC  <  AM260479/1864309‑1864186                                                                                                                                                                                                                                                                                                 GCGCGACCGGTTCCCGTGAAATGCGGAAAATTTTCCATCAGATCAAGAACGAACGGACAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCT                                                                                                                                                           <  2:1006945/134‑1      cCCGGTTCCCGTGAACTGCGGAAAATTTTCCATCACATCAAGAACGAACCCACACCTCTCAGCTCTCAGCTCTCATCTCTCTGCTCTCAGCTCTCTGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCT                                                                                                                                                      <  1:745181/133‑1                     ATGCGGAAAATTTTCCATCAGATCAAGAACGAACGGACAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTC                                                                                                                                       >  1:436942/1‑134                                      TCAGATCAAGAACGAACGGACAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAACTCTCAGCTCTCGGCTCTCAGCCCTCAGCTCT                                                                                                                        >  1:155478/1‑132                                                                                   TCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCT                                                                                                                                                             <  2:37324/50‑1                                                                                                       CTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGC                                                                                               <  2:801540/92‑1                                                                                                             GCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTtgaa                                                            >  2:731408/1‑117                                                                                                                    GCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCGAA                                                     <  1:731408/121‑1                                                                                                                            CTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAG                                                                                                              <  1:1086195/56‑1                                                                                                                             TCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCT                                                                                                                   >  1:37324/1‑50                                                                                                                              CTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCGCAGTCTAGGATGCGAAGTGGCAAAC                              >  1:294301/1‑134                                                                                                                              CTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCACTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCGAAGCCTAGGACGCGAAGCGGCAAAC                              >  2:133766/1‑134                                                                                                                               TCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAG                                                                                                <  2:116970/67‑1                                                                                                                                          CTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAG                                                                                                >  2:1086195/1‑56                                                                                                                                                 CTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCGAA                                                     >  1:801540/1‑92                                                                                                                                                           TCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAG                                                                    >  1:116970/1‑67                                                                                                                                                             AGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCGAAGTCTAGGATGCGAAGTGGCAAACTTCATGCGGACTGCGTGCGAAATGACAC  <  1:133766/131‑1                                                                                                                                                                                                                                                                                                 GCGCGACCGGTTCCCGTGAAATGCGGAAAATTTTCCATCAGATCAAGAACGAACGGACAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/1864402‑1864240 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagctctcagctctcagctctcagctctcagctctcAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCAGCTCTCGAAGTCTAGGATGCGAAGTGGCAAACTTCATGCGGACTGCGTGCGAAATGACAC  <  AM260479/1864309‑1864186

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.