New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	1864240 =	21 (0.790)	9 (0.520)	4/136	1.4	45.4%	intergenic (+776/‑280)	h16_A1704/h16_A1706	transcriptional regulator, LysR‑family/putative peptidase, S08A subfamily
	?	AM260479	= 1864309	8 (0.460)					intergenic (+845/‑211)	h16_A1704/h16_A1706	transcriptional regulator, LysR‑family/putative peptidase, S08A subfamily

GTGTCATTTCGCACGCAGTCCGCATGAAGTTTGCCACTTCGCATCCTAGACTTCGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGTCCGTTCGTTCTTGATCTGATGGAAAATTTTCCGCATTTCACGGGAACCGGTCGCGCTTGCTTGACCGTCTGGCGCACACCCATTGGAAGCCTT  >  AM260479/1864186‑1864439                                                                                                                            |                                                                                                                                   gtgtCATTTCGCACGCAGTCCGCATGAAGTTTGCCACTTCGCATCCTAGACTTCGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTgagagct                                                                                                                             <  1:133766‑M2/131‑8 (MQ=255)                             gTTTGCCGCTTCGCGTCCTAGGCTTCGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGTGCTGAGAGCTGAGAGCTGAGAGCTgagagctgagagctgagagctgagagctgagagctgag                                                                                              >  2:133766‑M2/1‑96 (MQ=255)                             gTTTGCCACTTCGCATCCTAGACTGCGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTgagagctgagagctgagagctgagagctgagagctgag                                                                                              >  1:294301‑M2/1‑96 (MQ=255)                                                 agagctGAGGGCTGAGAGCCGAGAGCTGAGAGTTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGTCCGTTCGTTCTTGATCTGa                                                                            >  1:155478‑M1/7‑132 (MQ=255)                                                    ttCGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTgagagctgagagctgagagctgagagctgagagctgagagctgagagc                                                                                    <  1:731408‑M2/121‑49 (MQ=255)                                                    ttCGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTgagagctgagagctgagag                                                                                                                 >  1:801540‑M2/1‑73 (MQ=255)                                                           ttcaagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagc                                                                             >  2:731408‑M2/5‑66 (MQ=255)                                                                GAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGTCCGTTCGTTCTTGATCTGATGGAAAATTTTCCGCAt                                                           >  1:436942‑M1/1‑134 (MQ=255)                                                                   ctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctga                                                                                                                           >  1:116970‑M2/1‑58 (MQ=255)                                                                               AGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCAGAGAGCTGAGAGCAGAGAGATGAGAGCTGAGAGCTGAGAGGTGTGGGTTCGTTCTTGATGTGATGGAAAATTTTCCGCAGTTCACGGGAACcggg                                            <  1:745181‑M1/134‑2 (MQ=255)                                                                                    AGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGTCCGTTCGTTCTTGATCTGATGGAAAATTTTCCGCATTTCACGGGAACCGGTCgcgc                                       <  2:1006945‑M1/134‑1 (MQ=255)                                                                                      agctgagagctgagagctgagagctgagagctgagagctgagagctgaga                                                                                                                         <  2:37324‑M1/50‑1 (MQ=255)                                                                                              gctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagag                                                                       <  2:801540‑M2/92‑62 (MQ=255)                                                                                               ctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctga                                                                                               <  2:116970‑M2/67‑38 (MQ=255)                                                                                               ctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagag                                                                                                          >  2:1086195‑M2/1‑30 (MQ=255)                                                                                                             ctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagag                                                                                            <  1:1086195‑M2/56‑41 (MQ=255)                                                                                                                  agctgagagctgagagctgagagctgagagctgagagctgagagctgaga                                                                                             >  1:37324‑M2/1‑11 (MQ=255)                                                                                                                  agctgagagctgagagctgagagctgagagctgagagctgagagctgTCCGTTCGTTCTTGATCTGATGGAAAATTTTCCGCAt                                                           >  1:290483/1‑84 (MQ=255)                                                                                                                  agctgagagctgagagctgagagctgagagctgagagctgagagctgTCCGTTCGTTCTTGATCTGATGGAAAATTTTCCGCAt                                                           <  2:290483/84‑1 (MQ=255)                                                                                                                       agagctgagggctgagagccgagagctgagagttgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgtccgttcgttcttgatctga      >  1:155478‑M2/1‑6 (MQ=255)                                                                                                                       agagctgagagctgagagctgagagctgagagctgagagctgTCCGTTCGTTCTTGATCTGATGGAAAATTTTCCGCATTTCACGGGAACCGGTCGCGCTTGCTTGACCGTCTGGCGCACACCCATTGGAAGcc    >  1:694172/1‑134 (MQ=255)                                                                                                                         agctgagagctgagagctgagagctgagagctgagagctgTCCGTTCGTTCTTGATCTGATGGAAAATTTTCCGCATTTCACGGGAACCGGTCGCGCTTGCTTGACCGTCTGGCGCACACCCATTGGAAGCCtt  <  1:1006945/134‑1 (MQ=255)                                                                                                                           ctgagagctgagagctgagagctgagagctgagagctgTCCGTTCGTTCTTGATCTGATGGAAAATTTTCCGCATTTCACGGGAACCGGTCGCGCTTGCTTGACCGTCTGGCGCACACCCATTGGAAGCCtt  >  1:399590/1‑132 (MQ=255)                                                                                                                           ctgagagctgagagctgagagctgagagctgagagctgTCCGTTCGTTCTTGATCTGATGGAAAATTTTCCGCATTTCACGGGAACCGGTCGCGCTTGCTTGACCGTCTGGCGCACACCCATTGGAAGCCtt  <  2:399590/132‑1 (MQ=255)                                                                                                                            tgagagctgagagctgagagctgagagctgagagctgTCCGTTCGTTCTTGATCTGATGGAAAATTTTCCGCATTTCACGGGaa                                                 <  2:139240/84‑1 (MQ=255)                                                                                                                            tgagagctgagagctgagagctgagagctgagagctgTCCGTTCGTTCTTGATCTGATGGAAAATTTTCCGCATTTCACGGGaa                                                 >  1:139240/1‑84 (MQ=255)                                                                                                                            |                                                                                                                                   GTGTCATTTCGCACGCAGTCCGCATGAAGTTTGCCACTTCGCATCCTAGACTTCGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGTCCGTTCGTTCTTGATCTGATGGAAAATTTTCCGCATTTCACGGGAACCGGTCGCGCTTGCTTGACCGTCTGGCGCACACCCATTGGAAGCCTT  >  AM260479/1864186‑1864439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.