| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | 1864240 = | 21 (0.790) | 9 (0.520) | 4/136 | 1.4 | 45.4% | intergenic (+776/‑280) | h16_A1704/h16_A1706 | transcriptional regulator, LysR‑family/putative peptidase, S08A subfamily |
| ? | AM260479 | = 1864309 | 8 (0.460) | intergenic (+845/‑211) | h16_A1704/h16_A1706 | transcriptional regulator, LysR‑family/putative peptidase, S08A subfamily | |||||
TGAACCCCAAGGTTTTTAACGCTCCCCGATTGCAGTGGCACTTTTGCTTTCACTTGGATCGAAGGTAAAAGTGTCATTTCGCACGCAGTCCGCATGAAGTTTGCCACTTCGCATCCTAGACTTCGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGTCCGTTCGTTCTTGATCTGA > AM260479/1864116‑1864365 | gtgtcatttcgcacgcagtccgcatgaagtttgccacttcgcatcctagacttcgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagct < 1:133766‑M1/7‑1 (MQ=255) aaCCCCAAGGTTTTTAACGCTCCCCGATTGCAGTGGCACTTTTGCTTTCACTTGGATCGAAGGTAAAAGTGTCATTTCGCACGCAGTCCGCATGAAGTTTGCCACTTCGCATCCTAGACTTCgagagctgagag > 2:27111/1‑134 (MQ=255) tttttAACGCTCCCCGATTGCAGTGGCACTTTTGCTTTCACTTGGATCGAAGGTAAAAGTGTCATTTCGCACGCAGTCCGCATGAAGTTTGCCACTTCGCATCCTAGACTTCgagagctgagagctgagagct > 2:892613/1‑133 (MQ=255) tttAACGCTCCCCGATTGCAGTGGCACTTTTGCTTTCACTTGGATCGAAGGTAAAAGTGTCATTTCGCACGCAGTCCGCATGAAGTTTGCCACTTCGCATCCTAGACTTCgagagctgagagctgagagctga < 2:957088/133‑1 (MQ=255) cTCCCCGATTGCAGTGGCACTTTTGCTTTCACTTGGATCGAAGGTAAAAGTGTCATTTCGCACGCAGTCCGCATGAAGTTTGCCACTTCGCATCCTAGACTTCgagagctgagagctgagagctgagagctgag < 1:357969/134‑1 (MQ=255) ccGATTGCAGTGGCACTTTTGCTTTCACTTGGATCGAAGGTAAAAGTGTCATTTCGCACGCAGTCCGCATGAAGTTTGCCACTTCGCATCCTAGACTTCgagagctgagagctgagagctgagagctgagagct > 2:895316/1‑134 (MQ=255) gtttgccgcttcgcgtcctaggcttcgagagctgagagctgagagctgagagctgagagctgagagctgagtgctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgag > 2:133766‑M1/97‑134 (MQ=255) gtttgccacttcgcatcctagactgcgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgag > 1:294301‑M1/97‑134 (MQ=255) aTTGCAGTGGCACTTTTGCTTTCACTTGGATCGAAGGTAAAAGTGTCATTTCGCACGCAGTCCGCATGAAGTTTGCCACTTCGCATCCTAGACTTCgagagctgagagctgagagctgagagctgagagctgag < 1:892613/134‑1 (MQ=255) aTTGCAGTGGCACTTTTGCTTTCACTTGGATCGAAGGTAAAAGTGTCATTTCGCACGCAGTCCGCATGAAGTTTGCCACTTCGCATCCTAGACTTCgagagctgagagctgagagctgagagctgagagctgag < 2:884256/134‑1 (MQ=255) gCTTTCACTTGGATCGAAGGTAAAAGTGTAATTTCGCACGCAGTCCGCATGAAGTTTGCCACTTCGCATCCTAGACTTCgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagag < 2:704983/133‑1 (MQ=255) cTTTCACTTGGATCGAAGGTAAAAGTGTCATTTCGCACGCAGTCCGCATGAAGTTTGCCACTTCGCATCCTAGACTTCgagagctgagagctgagagctgagagctgagagctgagag > 1:79086/1‑118 (MQ=255) cTTTCACTTGGATCGAAGGTAAAAGTGTCATTTCGCACGCAGTCCGCATGAAGTTTGCCACTTCGCATCCTAGACTTCgagagctgagagctgagagctgagagctgagagctgagag < 2:79086/118‑1 (MQ=255) ttcgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagc < 1:731408‑M1/48‑1 (MQ=255) ttcgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagag > 1:801540‑M1/74‑92 (MQ=255) ttcaagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagc > 2:731408‑M1/67‑121 (MQ=255) tCGAAGGTAAAAGTGTCATTTCGCACGCAGTCCGCATGAAGTTTGCCACTTCGCATCCTAGACTTCgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagag < 2:91532/134‑1 (MQ=255) gAAGGTAAAAGTGTCATTTCGCACGCAGTCCGCATGAAGTTTGCCACTTCGCATCCTAGACTTCgagagctgagagctgagagctgagagctgagagctgagagctgag > 1:116183/1‑109 (MQ=255) gAAGGTAAAAGTGTCATTTCGCACGCAGTCCGCATGAAGTTTGCCACTTCGCATCCTAGACTTCgagagctgagagctgagagctgagagctgagagctgagagctgag < 2:116183/109‑1 (MQ=255) tAAAAGTGTCATTTCGCACGCAGTCCGCATGAAGTTTGCCACTTCGCATCCTAGACTTCgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagag > 1:801670/1‑127 (MQ=255) tAAAAGTGTCATTTCGCACGCAGTCCGCATGAAGTTTGCCACTTCGCATCCTAGACTTCgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagag < 2:801670/127‑1 (MQ=255) tAAAAGTGTCATTTCGCACGCAGTCCGCATGAAGTTTGCCACTTCGCATCCTAGACTTCgagagctgagagctgagagctgagagctgagagctgagag < 1:529477/99‑1 (MQ=255) tAAAAGTGTCATTTCGCACGCAGTCCGCATGAAGTTTGCCACTTCGCATCCTAGACTTCgagagctgagagctgagagctgagagctgagagctgagag > 2:529477/1‑99 (MQ=255) ctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctga > 1:116970‑M1/59‑67 (MQ=255) gtgtCATTTCGCACGCAGTCCGCATGAAGTTTGCCACTTCGCATCCTAGACTTCGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTgagagct < 1:133766‑M2/131‑8 (MQ=255) caGTCCGCATGAAGTTTGCCACTTCGCATCCTAGACTTCgagagctgagag < 2:605411/51‑1 (MQ=255) caGTCCGCATGAAGTTTGCCACTTCGCATCCTAGACTTCgagagctgagag > 1:605411/1‑51 (MQ=255) gctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagag < 2:801540‑M1/61‑1 (MQ=255) tGAAGTTTGCCACTTCGCATCCTAGACTTCgagagctgagag > 2:875861/1‑42 (MQ=255) tGAAGTTTGCCACTTCGCATCCTAGACTTCgagagctgagag < 1:875861/42‑1 (MQ=255) ctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagagctga < 2:116970‑M1/37‑1 (MQ=255) ctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagag > 2:1086195‑M1/31‑56 (MQ=255) gTTTGCCGCTTCGCGTCCTAGGCTTCGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGTGCTGAGAGCTGAGAGCTGAGAGCTgagagctgagagctgagagctgagagctgagagctgag > 2:133766‑M2/1‑96 (MQ=255) gTTTGCCACTTCGCATCCTAGACTGCGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTgagagctgagagctgagagctgagagctgagagctgag > 1:294301‑M2/1‑96 (MQ=255) ctgagagctgagagctgagagctgagagctgagagctgagagctgagagctgagag < 1:1086195‑M1/40‑1 (MQ=255) agctgagagctgagagctgagagctgagagctgagagctgagagctgaga > 1:37324‑M1/12‑50 (MQ=255) agagctGAGGGCTGAGAGCCGAGAGCTGAGAGTTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGTCCGTTCGTTCTTGATCTGa > 1:155478‑M1/7‑132 (MQ=255) ttCGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTgagagctgagagctgagagctgagagctgagagctgagagctgagagc < 1:731408‑M2/121‑49 (MQ=255) ttCGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTgagagctgagagctgagag > 1:801540‑M2/1‑73 (MQ=255) | TGAACCCCAAGGTTTTTAACGCTCCCCGATTGCAGTGGCACTTTTGCTTTCACTTGGATCGAAGGTAAAAGTGTCATTTCGCACGCAGTCCGCATGAAGTTTGCCACTTCGCATCCTAGACTTCGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGAGAGCTGTCCGTTCGTTCTTGATCTGA > AM260479/1864116‑1864365 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |