New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 2917085	16 (0.600)	4 (0.170)	3/188	2.2	20.8%	coding (379/1098 nt)	h16_A2701	uncharacterized conserved protein
	?	AM260479	2917250 =	16 (0.660)					coding (214/1098 nt)	h16_A2701	uncharacterized conserved protein

CAGGGTGCCAAAGAGCCTGGCAGCCTTTTCGCAATTGCCCGCACCCAGGTCCACCAGCACGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/2917020‑2917085 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacgcagccCGGCCAGCACCTGCTCGCGCAGCGCGCCGCTGTCCTCGCGGTACTGCTGCACGAACTCCGGCTGGGGCGGCTGCCGGTGCGCGCGGCCATTGGCCAGCGCGACCAGGGCGGGCGGTGCGGCCGCATGGCCG  >  AM260479/2917250‑2917380                                                                                                                                                                                                       CAGGGTGCCAAAGAGCCTGGCAGCCTTTTCGCAATTGCCCGCACCCAGGTCCACCAGCACGCAGCCCGGCCAGCACCTGCTCGCGCAGCGCGCCGCTGTCCTCGCGGTACTGCTGCACGAACTCCGGCTGGGGC                                                                 >  1:692124/1‑134 CAGGGTGCCAAAGAGCCTGGCAGCCTTTTCGCAATTGCCCGCACCCAGGTCCACCAGCACGCAGCCCGGCCAGCACCTGCTCGCGCAGCGCGCCGCTGTCCTCGCGGTACTGCTGCACGAACTCCGGC                                                                       >  1:1169889/1‑128 CAGGGTGCCAAAGAGCCTGGCAGCCTTTTCGCAATTGCCCGCACCCAGGTCCACCAGCACGCAGCCCGGCCAGCACCTGCTCGCGCAGCGCGCCGCTGTCCTCGCGGTACTGCTGCACGAACTCCGGC                                                                       <  2:1169889/128‑1                            TTCGCAATTGCCCGCACCCAGGTCCACCAGCACGCAGCCCGGCCAGCACCTGCTCGCGCAGCGCGCCGCTGTCCTCGCGGTACTGCTGCACGAACTCCGGCTGGGGCGGCTGCCGGTGCGCGCGGCCATTGGC                                       <  2:692124/133‑1                                                         GCACGCAGCCCGGCCAGCACCTGCTCGCGCAGCGCGCCGCTGTCCTCGCGGTACTGCTGCACGAACTCCGGCTGGGGCGGCTGCCGGTGCGCGCGGCCATTGG                                        >  1:1058277/1‑103                                                         GCACGCAGCCCGGCCAGCACCTGCTCGCGCAGCGCGCCGCTGTCCTCGCGGTACTGCTGCACGAACTCCGGCTGGGGCGGCTGCCGGTGCGCGCGGCCATTGG                                        <  2:1058277/103‑1                                                                GCCCGGCCAGCACCTGCTCGCGCAGCGCGCCGCTGTCCTCGCGGTACTGCTGCACGAACTCCGGCTGGGGCGGCTGCCGGTGCGCGCGGCCATTGGCCAGCGCGACCAGGGCGGGCGGTGCGGCCGCATGGCCG  <  1:693664/134‑1                                                                                                                                                                                                       CAGGGTGCCAAAGAGCCTGGCAGCCTTTTCGCAATTGCCCGCACCCAGGTCCACCAGCACGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/2917020‑2917085 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacgcagccCGGCCAGCACCTGCTCGCGCAGCGCGCCGCTGTCCTCGCGGTACTGCTGCACGAACTCCGGCTGGGGCGGCTGCCGGTGCGCGCGGCCATTGGCCAGCGCGACCAGGGCGGGCGGTGCGGCCGCATGGCCG  >  AM260479/2917250‑2917380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.