| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | 3902705 = | 19 (0.710) | 6 (0.250) | 4/186 | 1.9 | 26.1% | coding (1246/1965 nt) | h16_A3629 | Hypothetical protein |
| ? | AM260479 | 3902743 = | 17 (0.710) | coding (1208/1965 nt) | h16_A3629 | Hypothetical protein | |||||
CATCGCGCTGCACCAGCAGGGCATGGCCGCCAGCGAGTTCATCGATCACTGGATCGACCTGCTCGACTGCCACGCCGACGCCGGCCAGCACCAGAAAGTAGCCGAGCTGGCCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260479/3902820‑3902705‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggccggcgTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGCCATGCCCTGCTGGTGCAGCGCGATGCGCTCGTCCACGTGCGCGGCGTCGGCCGGCAGGCTGCGCGACAGCAGCCGGCAA > AM260479/3902743‑3902874 CATCGCGCTGCACCAGCAGGGCATGGCCGCCAGCGAGTTCATCGATCACTGGATCGACCTGCTCGACTGCCACGCCGACGCCGGCCAGCACCAGAAAGTAGCCGAGCTGGCCGGCGTCGGCGTGGCAGTCGAGC < 1:147862/134‑1 AGCGAGTTCATCGATCACTGGATCGACCTGCTCGACTGCCACGCCGACGCCGGCCAGCACCAGAAAGTAGCCGAGCTGGCCGGCGTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGG < 2:794374/134‑1 GCTCGACTGCCACGCCGACGCCGGCCAGCACCAGAAAGTAGCCGAGCTGGCC < 1:443377/52‑1 GCTCGACTGCCACGCCGACGCCGGCCAGCACCAGAAAGTAGCCGAGCTGGCC > 2:443377/1‑52 cctCGCCGGCCAGCACCAGAAAGTAGCCGAGCTGGCCGGCGTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGC < 1:146256/88‑1 cctCGCCGGCCAGCACCAGAAAGTAGCCGAGCTGGCCGGCGTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGC > 2:146256/4‑91 tCGCCGGCCAGCACCAGAAAGTAGCCGAGCTGGCCGGCGTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGCC > 1:1140160/2‑93 tCGCCGGCCAGCACCAGAAAGTAGCCGAGCTGGCCGGCGTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGCC < 2:1140160/92‑1 GCTGGCCGGCGTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGCCATGCCCTGCTGGTGCAGCGCGATGCGCTCGTCCACGTGCGCGGCGTCGGCCGGCAGGCTGCGCGACAG > 1:1103679/1‑133 CCGGCGTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGCCATGCCCTGCTGGTGCAGCGCGATGCGCTCGTCCACGTGCGCGGCGTCGGCCGGCAGGCTGCGCGACAGCAGCCG > 1:304304/1‑134 GCGTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGCCATGCCCTGCTGGTGCAGCGCGATGCGCTCGTCCACGTGCGCGGCGTCGGCCGGCAGGCTGCGCGACAGCAGCCGGC > 1:306929/1‑133 GCGTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGCCATGCCCTGCTGGTGCAGCGCGA > 1:822477/1‑79 GCGTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGCCATGCCCTGCTGGTGCAGCGCGA < 2:822477/79‑1 CGTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGCCATGCCCTGCTGGTGCAGCGCGATGCGCTCGTCCACGTGCGCGGCGTCGGCCGGCAGGCTGCGCGACAGCAGCCGGCAA < 2:304304/134‑1 CGTCGGCGCGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGCCATGCCCTGCTGGTGCAGCGCGATGCGCTCGTCCACGTGCGCGGCGTCGGCCGGCAGGCTGCGCGACAGCAGCCGGCAA < 2:486788/134‑1 CATCGCGCTGCACCAGCAGGGCATGGCCGCCAGCGAGTTCATCGATCACTGGATCGACCTGCTCGACTGCCACGCCGACGCCGGCCAGCACCAGAAAGTAGCCGAGCTGGCCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260479/3902820‑3902705‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggccggcgTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGCCATGCCCTGCTGGTGCAGCGCGATGCGCTCGTCCACGTGCGCGGCGTCGGCCGGCAGGCTGCGCGACAGCAGCCGGCAA > AM260479/3902743‑3902874 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |