New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	3902705 =	19 (0.710)	6 (0.250)	4/186	1.9	26.1%	coding (1246/1965 nt)	h16_A3629	Hypothetical protein
	?	AM260479	3902743 =	17 (0.710)					coding (1208/1965 nt)	h16_A3629	Hypothetical protein

CCGCCCATGGCCTTCAAGGCCGCGATCATGCGGCTGAAGGCCCAGGTCACGTCGGCCGGGTTACGCTCCAGCGGGTAGCGGTTGAGCACCTCGCCGGCCAGCTCGGCTACTTTCTGGTGCTGGCCGGCGTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGCCATGCCCTGCTGGTGCAGCGCGATGCGCTCGTCCACGTGCGCGGCGTCGGCCGGCAGGCTGCGCGACAGCAGCCGGCAA  >  AM260479/3902614‑3902874                                                                                                                                  |                                                                                                                                    ccgccCATGGCCTTCAAGGCCGCGATCATGCGGCTGAAGGCCCAGGTCACGTCGGCCGGGTTACGCTCCAGCGGGTAGCGGTTGAGCACCTCGCCGGCCAGCTCGGCTACTTTCTGGTGCTGGCcggcgtcggc                                                                                                                                 <  1:866248/134‑1 (MQ=255)              catcgcgctgcaccagcagggcatggccgccagcgagttcatcgatcactggatcgacctgctcgactgccacgccgacgccggccagcaccagaaagtagccgagctggccggcgTCGGCGTGGCAGTCGAGc                                                                                                                    <  1:147862‑M2/18‑1 (MQ=255)                           cATGCGGCTGAAGGCCCAGGTCACGTCGGCCGGGTTACGCTCCAGCGGGTAGCGGTTGAGCACCTCGCCGGCCAGCTCGGCTACTTTCTGGTGCTGGCCGGCGTCGGCGTGGCAGTCGAGCAGGTCGATCCAGt                                                                                                       >  1:411705/1‑134 (MQ=255)                                           ccagcgagttcatcgatcactggatcgacctgctcgactgccacgccgaCGCCGGCCAGCTCGGCTACTTTCTGGTGCTGGCCGGCGTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCt                                                                                       <  2:794374‑M1/85‑1 (MQ=255)                                             agcgagttcatcgatcactggatcgacctgctcgactgccacgccgacgccggccagcaccagaaagtagccgagctggccggcgTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTgg                                                                                     <  2:794374‑M2/49‑1 (MQ=255)                                                       gCCGGGTTACGCTCCAGCGGGTAGCGGTTGAGCACCTCGCCGGCCAGCTCGGCTACTTTCTGGTGCTGGCCGGCGTCGGCGTGGCAGTCGAGc                                                                                                                    >  1:402639/1‑93 (MQ=255)                                                       gCCGGGTTACGCTCCAGCGGGTAGCGGTTGAGCACCTCGCCGGCCAGCTCGGCTACTTTCTGGTGCTGGCCGGCGTCGGCGTGGCAGTCGAGc                                                                                                                    <  2:402639/93‑1 (MQ=255)                                                               aCGCTCCAGCGGGTAGCGGTTGAGCACCTCGCCGGCCAGCTCGGCTACTTTCTGGTGCTGGCCGGCGTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGCCATGCCCTGCTgg                                                                    <  2:653718/133‑1 (MQ=255)                                                                         gggTAGCGGTTGAGCACCTCGCCGGCCAGCTCGGCTACTTTCTGGTGCTGGCCGGCGTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGCCATGCCCTGCTGGTGCAGCGCGAt                                                         <  1:539869/134‑1 (MQ=255)                                                                          ggTAGCGGTTGAGCACCTCGCCGGCCAGCTCGGCTACTTTCTGGTGCTGGCCGGCGTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTg                                                                                      <  2:284234/104‑1 (MQ=255)                                                                          ggTAGCGGTTGAGCACCTCGCCGGCCAGCTCGGCTACTTTCTGGTGCTGGCCGGCGTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTg                                                                                      >  1:284234/1‑104 (MQ=255)                                                                          ggTAGCGGTTGAGCACCTCGCCGGCCAGCTCGGCTACTTTCTGGTGCTGGCCGGCGTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGCCATGCCCTGCTGGTGCAGCGCGATg                                                        >  1:406462/1‑134 (MQ=255)                                                                          gctcgactgccacgccgaCGCCGGCCAGCTCGGCTACTTTCTGGTGCTGGCCGGCGTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGCCATGCCCTGCTGGTGCAGCGCGATg                                                        <  1:147862‑M1/116‑1 (MQ=255)                                                                                     aGCACCTCGCCGGCCAGCTCGGCTACTTTCTGGTGCTGGCCGGCGTCGGCGTGGCAGTCGAGc                                                                                                                    <  1:283958/63‑1 (MQ=255)                                                                                     aGCACCTCGCCGGCCAGCTCGGCTACTTTCTGGTGCTGGCCGGCGTCGGCGTGGCAGTCGAGc                                                                                                                    >  2:283958/1‑63 (MQ=255)                                                                                        aCCTCGCCGGCCAGCTCGGCTACTTTCTGGTGCTGGCCGGCGTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGcc                                                                                >  2:489257/1‑96 (MQ=255)                                                                                        aCCTCGCCGGCCAGCTCGGCTACTTTCTGGTGCTGGCCGGCGTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGcc                                                                                <  1:489257/96‑1 (MQ=255)                                                                                        aCCTCGCCGGCCAGCTCGGCTACTTTCTGGTGCTGGCCGGCGTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGCCATGCCCTGCTGGTGCAGCGCGATGCGCTCGTCCACGTg                                          >  1:501674/1‑134 (MQ=255)                                                                                         cctcgccggccagcaccagaaagtagccgagctggccggcgTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTggc                                                                                    <  1:146256‑M2/50‑1 (MQ=255)                                                                                         cctcgccggccagcaccagaaagtagccgagctggccggcgTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTggc                                                                                    >  2:146256‑M2/42‑91 (MQ=255)                                                                                           tcgccggccagcaccagaaagtagccgagctggccggcgTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGcc                                                                                >  1:1140160‑M2/40‑93 (MQ=255)                                                                                           tcgccggccagcaccagaaagtagccgagctggccggcgTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGcc                                                                                <  2:1140160‑M2/54‑1 (MQ=255)                                                                                                GGCCAGCTCGGCTACTTTCTGGTGCTGGCCGGCGTCGGCGTGGCAGTCGAGc                                                                                                                    >  2:443377‑M1/1‑52 (MQ=255)                                                                                                GGCCAGCTCGGCTACTTTCTGGTGCTGGCCGGCGTCGGCGTGGCAGTCGAGc                                                                                                                    <  1:443377‑M1/52‑1 (MQ=255)                                                                                                          gCTACTTTCTGGTGCTGGCCGGCGTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGCCATGCCCTGCTGGTGCAGCGCGATGCGCTCGTCCACGTGCGCGGCGTCGGCCGGCAg                        >  2:797681/1‑134 (MQ=255)                                                                                                               tttCTGGTGCTGGCCGGCGTCGGCGCGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGCCATGCCCTGCTGGTGCAGCGCGATGCGCTCGTCCACGTGCGCGGCGTCGGCCGGCAGGCTgc                   >  1:486788/1‑134 (MQ=255)                                                                                                                     gTGCTGGCCGGCGTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGCCATGCCCTGCTGGTGCAGCGCGATGCGCTCGTCCACGTGCGCGGCGTCGGCCGGCAGGCTGCGCGAc              <  1:447580/133‑1 (MQ=255)                                                                                                                       gctggccggcgTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGCCATGCCCTGCTGGTGCAGCGCGATGCGCTCGTCCACGTGCGCGGCGTCGGCCGGCAGGCTGCGCGAcag            >  1:1103679‑M2/12‑133 (MQ=255)                                                                                                                            ccggcgTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGCCATGCCCTGCTGGTGCAGCGCGATGCGCTCGTCCACGTGCGCGGCGTCGGCCGGCAGGCTGCGCGACAGCAGCCg      >  1:304304‑M2/7‑134 (MQ=255)                                                                                                                               gcgTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGCCATGCCCTGCTGGTGCAGCGCGa                                                          >  1:822477‑M2/4‑79 (MQ=255)                                                                                                                               gcgTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGCCATGCCCTGCTGGTGCAGCGCGa                                                          <  2:822477‑M2/76‑1 (MQ=255)                                                                                                                               gcgTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGCCATGCCCTGCTGGTGCAGCGCGATGCGCTCGTCCACGTGCGCGGCGTCGGCCGGCAGGCTGCGCGACAGCAGCCGGc    >  1:306929‑M2/4‑133 (MQ=255)                                                                                                                                cgTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGCCATGCCCTGCTGGTGCAGCGCGATGCGCTCGTCCACGTGCGCGGCGTCGGCCGGCAGGCTGCGCGACAGCAGCCGGCaa  <  2:304304‑M2/132‑1 (MQ=255)                                                                                                                                cgTCGGCGCGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGCCATGCCCTGCTGGTGCAGCGCGATGCGCTCGTCCACGTGCGCGGCGTCGGCCGGCAGGCTGCGCGACAGCAGCCGGCaa  <  2:486788‑M2/132‑1 (MQ=255)                                                                                                                                  |                                                                                                                                    CCGCCCATGGCCTTCAAGGCCGCGATCATGCGGCTGAAGGCCCAGGTCACGTCGGCCGGGTTACGCTCCAGCGGGTAGCGGTTGAGCACCTCGCCGGCCAGCTCGGCTACTTTCTGGTGCTGGCCGGCGTCGGCGTGGCAGTCGAGCAGGTCGATCCAGTGATCGATGAACTCGCTGGCGGCCATGCCCTGCTGGTGCAGCGCGATGCGCTCGTCCACGTGCGCGGCGTCGGCCGGCAGGCTGCGCGACAGCAGCCGGCAA  >  AM260479/3902614‑3902874

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.