New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 4023841	27 (1.010)	6 (0.280)	5/168	1.5	23.2%	coding (1348/1455 nt)	h16_A3725	signal transduction histidine kinase
	?	AM260479	= 4023821	18 (0.840)					coding (1368/1455 nt)	h16_A3725	signal transduction histidine kinase

ACGGTGGCGGAGGAGTTATATGGTTAGGGGTTATTCGCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/4023704‑4023841 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccatctcgcgcgagatggcGGCGCGGTTTGGCGGCACGGTGGAGCTTGGCGACGGCTTGCAGGGCACCGGCGTGCGCGCGGTGCTGAAGCTGCCCATCGGCGAATAACCCCTAACCATATAACTCCTCCGCCACCGT  <  AM260479/4023821‑4023704                                                                                                                                                                                                                                                                  ACGGTGGCGGAGGAGTTATATGGTTAGGGGTTATTCGCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGC                                                                                                                                >  2:540686/1‑130                              GTTATTCGCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCGGCGCGGTTTGGCGGCACGGTGGAG                                                                                               >  2:354278/1‑134                              GTTATTCGCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCGGCGCGGTTTGGCGGCACGGTGGAG                                                                                               >  2:494203/1‑134                                     GCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGAT                                                                                                                           >  2:538204/1‑99                                                       CACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCG                                                                                                                                           <  1:357018/65‑1                                                       CACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCG                                                                                                                                           >  2:357018/1‑65                                                                                 AGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCGGCGCGGTTTGGC                                                                                                           >  2:794101/1‑71                                                                                        GCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCGGCGCGGTTTGGCGGCACGGTGGAGCTTGGCGACGGCTTGCAGGGCACCGGCGTGCGCGCGGTGCTGAAGCTGCCCATCGGC                                      >  1:494203/1‑133                                                                                           AAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCGGCGCGGTTTGGCGGCACGGTGGAGCTTGGCGACGGCTTGCAGGGCACCGGCGTGCGCGCGGTGCTGAAGCTGCCCATCGGCGAA                                   >  1:354278/1‑133                                                                                                          GCCAAACCGCGCCGCCATCTCGCGCGAGATGGCGGCGCGGTTTGGCGGCACGGTGGAGCTTGGCGACGGCT                                                                                  >  1:794101/1‑71                                                                                                                          ATCTCGCGCGAGATGGCGGCGCGGTTTGGCGGCACGGTGGAGCTTGGCGACGGCTTGCAGGGCACCGGCGTGCGCGCGGTGCTGAAGCTGCCCATCGGC                                      >  1:538204/1‑99                                                                                                                           TCTCGCGCGAGATGGCGGCGCGGTTTGGCGGCACGGTGGAGCTTGGCGACGGCTTGCAGGGCACCGGCGTGCGCGCGGTGCTGAAGCTGCCCATCGGCGAATAACCCCTAACCATATAACTCCTCCGCCACCGT  >  1:72242/1‑134                                                                                                                               GCGCGAGATGGCGGCGCGGTTTGGCGGCACGGTGGAGCTTGGCGACGGCTTGCAGGGCACCGGCGTGCGCGCGGTGCTGAAGCTGCCCATCGGCGAATAACCCCTAACCATATAACTCCTCCGCCACCGT  <  2:1031746/130‑1                                                                                                                                                                                                                                                                  ACGGTGGCGGAGGAGTTATATGGTTAGGGGTTATTCGCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/4023704‑4023841 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccatctcgcgcgagatggcGGCGCGGTTTGGCGGCACGGTGGAGCTTGGCGACGGCTTGCAGGGCACCGGCGTGCGCGCGGTGCTGAAGCTGCCCATCGGCGAATAACCCCTAACCATATAACTCCTCCGCCACCGT  <  AM260479/4023821‑4023704

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.