New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 4023841	27 (1.010)	6 (0.280)	5/168	1.5	23.2%	coding (1348/1455 nt)	h16_A3725	signal transduction histidine kinase
	?	AM260479	= 4023821	18 (0.840)					coding (1368/1455 nt)	h16_A3725	signal transduction histidine kinase

ACGGTGGCGGAGGAGTTATATGGTTAGGGGTTATTCGCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCAACGCGCCGGTAGAAGCGCGCGAAGACCTTTTCGCGCTCTTCGGCCGGAATGCCCGGCCC  >  AM260479/4023704‑4023934                                                                                                                      |                                                                                                                  aCGGTGGCGGAGGAGTTATATGGTTAGGGGTTATTCGCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCgccatctcgcgcgaga                                                                                                   >  1:72242‑M2/1‑118 (MQ=255) aCGGTGGCGGAGGAGTTATATGGTTAGGGGTTATTCGCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCgccatctcgcgc                                                                                                       <  2:1031746‑M2/130‑13 (MQ=255) aCGGTGGCGGAGGAGTTATATGGTTAGGGGTTATTCGCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGC                                                                                                       >  2:540686‑M1/1‑130 (MQ=255)       gCGGAGGAGTTATATGGTTAGGGGTTATTCGCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGcca                                                                                             <  2:686110/134‑1 (MQ=255)                       gTTAGGGGTTATTCGCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCagcccggagcc                                                                             <  2:410742/134‑1 (MQ=255)                          aGGGGTTATTCGCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCagcccggagcccg                                                                           <  2:525255/133‑1 (MQ=255)                            gggTTATTCGCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCAGCCCGGAGCCCGGCt                                                                        >  2:668004/1‑134 (MQ=255)                              gTTATTCGCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCggcgcggtttggcggcacggtggag                                                                      >  2:494203‑M1/1‑109 (MQ=255)                              gTTATTCGCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCggcgcggtttggcggcacggtggag                                                                      >  2:354278‑M1/1‑109 (MQ=255)                                  ttCGCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCgccatctcgcgcgagatggcggcgcggtttggcggcacggtggagctt                                                                   >  1:354278‑M2/1‑85 (MQ=255)                                     gCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCgccatctcgcgcgagatggcggcgcggtttggcggcacggtggagcttggc                                                                >  1:494203‑M2/1‑82 (MQ=255)                                     gCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCgccatctcgcgcgagat                                                                                                  >  1:538204‑M2/1‑82 (MQ=255)                                     gCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCagcccggagcc                                                                             >  1:830715/1‑120 (MQ=255)                                     gCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCagcccggagcc                                                                             <  2:830715/120‑1 (MQ=255)                                     gCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTg                                                                <  1:540686/133‑1 (MQ=255)                                     gCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGAT                                                                                                  >  2:538204‑M1/1‑99 (MQ=255)                                       cGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCa                                                             <  1:668004/134‑1 (MQ=255)                                                       cACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCAACGCGCCGGTAGAAgc                                             <  1:1031746/134‑1 (MQ=255)                                                       cACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCG                                                                                                                  <  1:357018‑M1/65‑1 (MQ=255)                                                       cACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCG                                                                                                                  >  2:357018‑M1/1‑65 (MQ=255)                                                                cACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCAACGCGCCGGTAGAAGCGCGCGAAGa                                    >  1:692895/1‑134 (MQ=255)                                                                cACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCAACGCGCCGGTAGAAGCGCGCGAAGa                                    >  2:471531/1‑134 (MQ=255)                                                                cACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCAACCGTGCCGCCCAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCACCCCGGAGCCCGGCTCCGCATTGCCAACGCGCCGGTAGAAGCGCGCGAAGa                                    >  2:1059184/1‑134 (MQ=255)                                                                                 aGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCgccatctcgcgcgagatggcggcgcggtttggc                                                                                  >  1:794101‑M2/1‑38 (MQ=255)                                                                                 aGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCggcgcggtttggc                                                                                  >  2:794101‑M1/1‑58 (MQ=255)                                                                                   ccGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCAACGCGCCGGTAGAAGCGCGCGAAGACCTTTTCGCGCTCTTCGGc                 >  2:760824/1‑134 (MQ=255)                                                                                        gCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCggcgcggtttggcggcacggtggagcttggcgacggcttgcagggcaccggcgtgcgcgcggtgctgaagctgcccatcggc             >  1:494203‑M1/1‑51 (MQ=255)                                                                                         ccAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCAACGCGCCGGTAGAAGCGCGCGAAGACCTTTTCGCGCTCTTCGGCCGGAAt           <  1:471531/134‑1 (MQ=255)                                                                                           aaGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCggcgcggtttggcggcacggtggagcttggcgacggcttgcagggcaccggcgtgcgcgcggtgctgaagctgcccatcggcgaa          >  1:354278‑M1/1‑48 (MQ=255)                                                                                              cTCCACCGTGCCGCCAAACCGCGCCgccatctcgcgcgagatggcggcgcggtttggcggcacggtggagcttggcgacggcttgcagggcaccggcgtgcgcgcggtgctgaagctgcccatcggcgaataac      >  2:354278‑M2/1‑25 (MQ=255)                                                                                              cTCCACCGTGCCGCCAAACCGCGCCgccatctcgcgcgagatggcggcgcggtttggcggcacggtggagcttggcgacggcttgcagggcaccggcgtgcgcgcggtgctgaagctgcccatcggcgaataac      >  2:494203‑M2/1‑25 (MQ=255)                                                                                                          gccAAACCGCGCCgccatctcgcgcgagatggcggcgcggtttggcggcacggtggagcttggcgacggct                                                         >  2:794101‑M2/1‑13 (MQ=255)                                                                                                          gccAAACCGCGCCGCCATCTCGCGCGAGATGGCggcgcggtttggcggcacggtggagcttggcgacggct                                                         >  1:794101‑M1/1‑33 (MQ=255)                                                                                                          gccAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCagcccggagc                                                                              <  2:457988/50‑1 (MQ=255)                                                                                                          gccAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCagcccggagc                                                                              >  1:457988/1‑50 (MQ=255)                                                                                                               aCCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCAACGCGCCGGTAGAAGCGCGCGAAGACCTTTTCGCGCTCTTCGGCCGGAATGCCCGGccc  <  2:353722/121‑1 (MQ=255)                                                                                                               aCCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCAACGCGCCGGTAGAAGCGCGCGAAGACCTTTTCGCGCTCTTCGGCCGGAATGCCCGGccc  >  1:353722/1‑121 (MQ=255)                                                                                                                      |                                                                                                                  ACGGTGGCGGAGGAGTTATATGGTTAGGGGTTATTCGCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCAACGCGCCGGTAGAAGCGCGCGAAGACCTTTTCGCGCTCTTCGGCCGGAATGCCCGGCCC  >  AM260479/4023704‑4023934

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.