New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 = 402384127 (1.010)6 (0.280) 5/168 1.5 23.2% coding (1348/1455 nt) h16_A3725 signal transduction histidine kinase
?AM260479 = 4023821 18 (0.840)coding (1368/1455 nt) h16_A3725 signal transduction histidine kinase

GCGGAGGAGTTATATGGTTAGGGGTTATTCGCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCAACGCGCCGGTAGAAGCGCGCGAAGACCTTTTCGCGCTCTTCGGCCGGAATGCCCGGCCCATCGTCTTCCACCACCAGGCACGCGGTCTGGTCGGCG  >  AM260479/4023710‑4023971
                                                                                                                                   |                                                                                                                                  
gCGGAGGAGTTATATGGTTAGGGGTTATTCGCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGcca                                                                                                                                  <  2:686110/134‑1 (MQ=255)
                gTTAGGGGTTATTCGCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCagcccggagcc                                                                                                                  <  2:410742/134‑1 (MQ=255)
                   aGGGGTTATTCGCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCagcccggagcccg                                                                                                                <  2:525255/133‑1 (MQ=255)
                     gggTTATTCGCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCAGCCCGGAGCCCGGCt                                                                                                             >  2:668004/1‑134 (MQ=255)
                       gTTATTCGCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCggcgcggtttggcggcacggtggag                                                                                                           >  2:494203‑M1/1‑109 (MQ=255)
                       gTTATTCGCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCggcgcggtttggcggcacggtggag                                                                                                           >  2:354278‑M1/1‑109 (MQ=255)
                              gCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCagcccggagcc                                                                                                                  <  2:830715/120‑1 (MQ=255)
                              gCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCagcccggagcc                                                                                                                  >  1:830715/1‑120 (MQ=255)
                              gCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTg                                                                                                     <  1:540686/133‑1 (MQ=255)
                                cGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCa                                                                                                  <  1:668004/134‑1 (MQ=255)
                                                cACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCAACGCGCCGGTAGAAgc                                                                                  <  1:1031746/134‑1 (MQ=255)
                                                         cACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCAACGCGCCGGTAGAAGCGCGCGAAGa                                                                         >  2:471531/1‑134 (MQ=255)
                                                         cACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCAACGCGCCGGTAGAAGCGCGCGAAGa                                                                         >  1:692895/1‑134 (MQ=255)
                                                         cACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCAACCGTGCCGCCCAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCACCCCGGAGCCCGGCTCCGCATTGCCAACGCGCCGGTAGAAGCGCGCGAAGa                                                                         >  2:1059184/1‑134 (MQ=255)
                                                                          aGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCggcgcggtttggc                                                                                                                       >  2:794101‑M1/1‑58 (MQ=255)
                                                                            ccGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCAACGCGCCGGTAGAAGCGCGCGAAGACCTTTTCGCGCTCTTCGGc                                                      >  2:760824/1‑134 (MQ=255)
                                                                                 gCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCggcgcggtttggcggcacggtggagcttggcgacggcttgcagggcaccggcgtgcgcgcggtgctgaagctgcccatcggc                                                  >  1:494203‑M1/1‑51 (MQ=255)
                                                                                  ccAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCAACGCGCCGGTAGAAGCGCGCGAAGACCTTTTCGCGCTCTTCGGCCGGAAt                                                <  1:471531/134‑1 (MQ=255)
                                                                                    aaGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCggcgcggtttggcggcacggtggagcttggcgacggcttgcagggcaccggcgtgcgcgcggtgctgaagctgcccatcggcgaa                                               >  1:354278‑M1/1‑48 (MQ=255)
                                                                                                   gccAAACCGCGCCGCCATCTCGCGCGAGATGGCggcgcggtttggcggcacggtggagcttggcgacggct                                                                                              >  1:794101‑M1/1‑33 (MQ=255)
                                                                                                   gccAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCagcccggagc                                                                                                                   <  2:457988/50‑1 (MQ=255)
                                                                                                   gccAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCagcccggagc                                                                                                                   >  1:457988/1‑50 (MQ=255)
                                                                                                        aCCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCAACGCGCCGGTAGAAGCGCGCGAAGACCTTTTCGCGCTCTTCGGCCGGAATGCCCGGccc                                       <  2:353722/121‑1 (MQ=255)
                                                                                                        aCCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCAACGCGCCGGTAGAAGCGCGCGAAGACCTTTTCGCGCTCTTCGGCCGGAATGCCCGGccc                                       >  1:353722/1‑121 (MQ=255)
                                                                                                                  cATCTCGCGCGAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCa                                                                                                  <  1:478652/52‑1 (MQ=255)
                                                                                                                  cATCTCGCGCGAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCa                                                                                                  >  2:478652/1‑52 (MQ=255)
                                                                                                                   aTCTCGCGCGAGATGGCggcgcggtttggcggcacggtggagcttggcgacggcttgcagggcaccggcgtgcgcgcggtgctgaagctgcccatcggc                                                  >  1:538204‑M1/1‑17 (MQ=255)
                                                                                                                   aTCTCGCGCGAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCAACGCGCCGGTAGAAGCGCGCGAAGACCTTTTCGCGCTCTTCGGCCGGAATGCCCGGCCCATCGTCTTCCACCACCAGGCAcgc               <  1:901226/134‑1 (MQ=255)
                                                                                                                    tctcGCGCGAGATGGCggcgcggtttggcggcacggtggagcttggcgacggcttgcagggcaccggcgtgcgcgcggtgctgaagctgcccatcggcgaataacccctaaccatataactcctccgccaccgt              >  1:72242‑M1/1‑16 (MQ=255)
                                                                                                                        gcgcgAGATGGCggcgcggtttggcggcacggtggagcttggcgacggcttgcagggcaccggcgtgcgcgcggtgctgaagctgcccatcggcgaataacccctaaccatataactcctccgccaccgt              <  2:1031746‑M1/130‑119 (MQ=255)
                                                                                                                        gcgcgAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCAACGCGCCGGTAGAAGCGCGCGAAGACCTTTTCGCGCTCTTCGGCCGGAATGCCCGGccc                                       >  1:839527/1‑105 (MQ=255)
                                                                                                                        gcgcgAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCAACGCGCCGGTAGAAGCGCGCGAAGACCTTTTCGCGCTCTTCGGCCGGAATGCCCGGccc                                       <  2:839527/105‑1 (MQ=255)
                                                                                                                          gcgAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCa                                                                                                  <  1:979848/44‑1 (MQ=255)
                                                                                                                          gcgAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCa                                                                                                  >  2:979848/1‑44 (MQ=255)
                                                                                                                             agaTGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCAACGCGCCGGTAGAAGCGCGCGAAGACCTTTTCGCGCTCTTCGGCCGGAATGCCCGGCCCATCGTCTTCCACCACCAGGCACGCGGTCTGGTCg     >  2:831618/1‑134 (MQ=255)
                                                                                                                                tGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCAACGCGCCGGTAGAAGCGCGCGAAGACCTTTTCGCGCTCTTCGGCCGGAATGCCCGGCCCATCGTCTTCCACCACCAGGCACGCGGTCTGGTCGgcg  <  1:760824/134‑1 (MQ=255)
                                                                                                                                   |                                                                                                                                  
GCGGAGGAGTTATATGGTTAGGGGTTATTCGCCGATGGGCAGCTTCAGCACCGCGCGCACGCCGGTGCCCTGCAAGCCGTCGCCAAGCTCCACCGTGCCGCCAAACCGCGCCGCCATCTCGCGCGAGATGGCCAGCCCCAGCCCGGAGCCCGGCTCCGCATTGCCAACGCGCCGGTAGAAGCGCGCGAAGACCTTTTCGCGCTCTTCGGCCGGAATGCCCGGCCCATCGTCTTCCACCACCAGGCACGCGGTCTGGTCGGCG  >  AM260479/4023710‑4023971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.