New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	194714 =	12 (0.390)	6 (0.220)	6/190	1.7	34.3%	intergenic (+16/+38)	h16_B0169/h16_B0170	transcriptional regulator, LysR‑family/Hypothetical protein
	?	AM260480	194734 =	12 (0.430)					intergenic (+36/+18)	h16_B0169/h16_B0170	transcriptional regulator, LysR‑family/Hypothetical protein

TTCCTGGGCGGCGCCAGGCTGGGCAAGGCCGACCCGTTCACTGACGGCGCCAGGACCACCGACCGCCGCGACGCATTCACCGACGGCGCCTGAGCTCCTGCCCTTTCCGTTGCCACGGCCCCGGCCGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/194844‑194714 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgtggcAACGGAAAGGGCAGGAGCTCAGGCGCCGTCGGTGAATGCGTCGCGGCGGTCGGTGGTCCTGGCGCCGTCAGTGAACGGGTCGGCCTTGCCCAGCCTGGCGCCGCCCAGGAACGGATCGGCCTTGCCGGCGTG  >  AM260480/194734‑194865                                                                                                                                                                                                                                                                         TTCCTGGGCGGCGCCAGGCTGGGCAAGGCCGACCCGTTCACTGACGGCGCCAGGACCACCGACCGCCGCGACGCATTCACCGACGGCGCCTGAGCTCCTGCCCTTTCCGTTGCCACGGCCCCGGCCGTGGCAAC                                                                                                                                   >  2:5076/1‑134       GGCGGCGCCAGGCTGGGCAAGGCCGACCCGTTCACTGACGGCGCCAGGACCACCGACCGCCGCGACGCATTCACCGACGGCGCCTGAGCTCCTGCCCTTTCCGTTGCCACGGCCCCGGCCGTGGCAACGGAAAG                                                                                                                             <  1:5076/134‑1                   CTGGGCAAGGCCGACCCGTTCACTGACGGCGCCAGGACCACCGACCGCCGCGACGCATTCACCGACGGCGCCTGAGCTCCTGCCCTTTCCGTTGCCACGGCCCCGGCCGTGGCAACGGAAAGGGCAGGAGCTCA                                                                                                                 <  1:651207/134‑1                                    GTTCACTGACGGCGCCAGGACCACCGACCGCCGCGACGCATTCACCGACGGCGCCTGAGCTCCTGCCCTTTCCGTTGCCACGGCCCCGGCCGTGGCAACGGAAAGGGCAGGAGCTCAGGCGCCGTCGGTGAATG                                                                                                >  2:1056605/1‑134                                         CTGACGGCGCCAGGACCGCTGACCGCCGCGACGCATTCACCGACGGCGCCGGAGCTCGCGCACTTTCCGTTGCAACGGCCCCGGCTGTGGCAACGGAAAGGGCAGGAGCTCAGGCGCCGTCGGTGAATGCGTCG                                                                                           <  1:740933/134‑1                                            ACGGCGCCAGGACCACCGACCGCCGCGACGCATTCACCGACGGCGCCTGAGCTCCTGCCCTTTCCGTTGCCACGGCCCCGGCCGTGGCAACGGAAAGGGCAGGAGCTCAGGCGCCGTCGGTGAATGCGTCGCGG                                                                                        <  1:1056605/134‑1                                                                                                                                TGGCAACGGAAAGGGCAGGAGCTCAGGCGCCGTCGGTGAATGCGTCGCGGCGGTCGGTGGTCCTGGCGCCGTCAGTGAACGGGTCGGCCTTGCCCAGCCTGGCGCCGCCCAGGAACGGATCGGCCTTGCCGGCG    <  2:740933/134‑1                                                                                                                                  GCAACGGAAAGGGCAGGAGCTCAGGCGCCGTCGGTGAATGCGTCGCGGCGGTCGGTGGTCCTGGCGCCGTCAGTGAACGGGTCGGCCTTGCCCAGCCTGGCGCCGCCCAGGAACGGATCGGCCTTGCCGGCGTG  <  2:651207/134‑1                                                                                                                                  GCAACGGAAAGGGCAGGAGCTCAGGCGCCGTCGGTGAATGCGTCGCGGCGGTCGGTGGTCCTGGCGCCGTCAGTGAACGGGTCGGCCTTGCCCAGCCTGGCGCCGCCCAGGAACGGATCGGCATTGCCGGCGTG  >  2:1018968/1‑134                                                                                                                                                                                                                                                                         TTCCTGGGCGGCGCCAGGCTGGGCAAGGCCGACCCGTTCACTGACGGCGCCAGGACCACCGACCGCCGCGACGCATTCACCGACGGCGCCTGAGCTCCTGCCCTTTCCGTTGCCACGGCCCCGGCCGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/194844‑194714 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgtggcAACGGAAAGGGCAGGAGCTCAGGCGCCGTCGGTGAATGCGTCGCGGCGGTCGGTGGTCCTGGCGCCGTCAGTGAACGGGTCGGCCTTGCCCAGCCTGGCGCCGCCCAGGAACGGATCGGCCTTGCCGGCGTG  >  AM260480/194734‑194865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.