New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	194714 =	12 (0.390)	6 (0.220)	6/190	1.7	34.3%	intergenic (+16/+38)	h16_B0169/h16_B0170	transcriptional regulator, LysR‑family/Hypothetical protein
	?	AM260480	194734 =	12 (0.430)					intergenic (+36/+18)	h16_B0169/h16_B0170	transcriptional regulator, LysR‑family/Hypothetical protein

GCGATCGAATCGATGATGGTGTCCGAGCTGGAGCCCGAGGCGGGCCTGGACGGGGGGATGGGGGCGGAAGCAGCCGCGAGCGGGCAGGCTGAAGGAGCGGCCCGCACGGCGGGTTGAGGGCGCTGGCGGGCCGCCACGGCCGGGGCCGTGGCAACGGAAAGGGCAGGAGCTCAGGCGCCGTCGGTGAATGCGTCGCGGCGGTCGGTGGTCCTGGCGCCGTCAGTGAACGGGTCGGCCTTGCCCAGCCTGGCGCCGCCCAGGAA  >  AM260480/194582‑194844                                                                                                                                     |                                                                                                                                   cacgccggcaatgccgatccgttcctgggcggcgccaggctgggcaaggccgacccgttcactgacggcgccaggaccaccgaccgccgcgacgcattcaccgacggcgcctgagctcctgccctttccgttGc                                                                                                                                   >  2:1018968‑M1/133‑134 (MQ=255) cacgccggcaaggccgatccgttcctgggcggcgccaggctgggcaaggccgacccgttcactgacggcgccaggaccaccgaccgccgcgacgcattcaccgacggcgcctgagctcctgccctttccgttGc                                                                                                                                   <  2:651207‑M1/2‑1 (MQ=255)   cgccggcaaggccgatccgttcctgggcggcgccaggctgggcaaggccgacccgttcactgacggcgccaggaccaccgaccgccgcgacgcattcaccgacggcgcctgagctcctgccctttccgttGCCa                                                                                                                                 <  2:740933‑M1/4‑1 (MQ=255)                           gCTGGAGCCCGAGGCGGGCCTGGACGGGGGGATGGGGGCGGAAGCAGCCGCGAGCGGGCAGGCTGAAGGAGCGGCCCGCACGGCGGGTTGAGGGCGCTGGCGGGCCGCCACGGCCGGGGCCGTGGCAACGGa                                                                                                           >  1:164385/1‑132 (MQ=255)                                                                  ggAAGCAGCCGCGAGCGGGCAGGCTGAAGGAGCGGCCCGCACGGCGGGTTGAGGGCGCTGGCGGGCCGCCACGGCCGGGGCCGTGGCAACGGAAAGGGCAGGAGCTCAGGCGCCGTCGGTGAATGCGTCgcggc                                                                  <  2:164385/134‑1 (MQ=255)                                                                                       ccgcgacgcattcaccgacggcgcctgagctcctgccctttccgttGCCACGGCCGGGGCCGTGGCAACGGAAAGGGCAGGAGCTCAGGCGCCGTCGGTGAATGCGTCGCGGCGGTCGGTGGTCCTGGCGCCGt                                             <  1:1056605‑M1/88‑1 (MQ=255)                                                                                          cgacgcattcaccgacggcgcctgagctcctgccctttccgttGCCACAGCCGGGGCCGTTGCAACGGAAAGTGCGCGAGCTCCGGCGCCGTCGGTGAATGCGTCGCGGCGGTCAGCGGTCCTGGCGCCGTCAg                                          <  1:740933‑M1/91‑1 (MQ=255)                                                                                               cattcaccgacggcgcctgagctcctgccctttccgttGCCACGGCCGGGGCCGTGGCAACGGAAAGGGCAGGAGCTCAGGCGCCGTCGGTGAATGCGTCGCGGCGGTCGGTGGTCCTGGCGCCGTCAGTGAAc                                     >  2:1056605‑M1/39‑134 (MQ=255)                                                                                                aGCGGCCCGCACGGCGGGTTGAGGGCGCTGGCGGGCCGCCACGGCCGGGGCCGTGGCAACGGAAAGGGCAGGAGCTCAGGCGCCGTCGGTGAATGCGTCGCGGCGGTCGGTGGTCCTGGCGCCGTCAg                                          <  2:744325/128‑1 (MQ=255)                                                                                                aGCGGCCCGCACGGCGGGTTGAGGGCGCTGGCGGGCCGCCACGGCCGGGGCCGTGGCAACGGAAAGGGCAGGAGCTCAGGCGCCGTCGGTGAATGCGTCGCGGCGGTCGGTGGTCCTGGCGCCGTCAg                                          >  1:744325/1‑128 (MQ=255)                                                                                                   ggCCCGCACGGCGGGTTGAGGGCGCTGGCGGGCCGCCACGGCCGGGGCCGTGGCAACGGAAAGGGCAGGAGCTCAGGCGCCGTCGGTGAATGCGTCGCGGCGGTCGGTGGTCCTGGCGCCGTCAGTGAACGGGt                                 <  1:387726/134‑1 (MQ=255)                                                                                                      ccGCACGGCGGGTTGAGGGCGCTGGCGGGCCGCCACGGCCGGGGCCGTGGCAACGGAAAGGGCAGGAGCTCa                                                                                            <  1:482081/72‑1 (MQ=255)                                                                                                      ccGCACGGCGGGTTGAGGGCGCTGGCGGGCCGCCACGGCCGGGGCCGTGGCAACGGAAAGGGCAGGAGCTCa                                                                                            >  2:482081/1‑72 (MQ=255)                                                                                                                tgagctcctgccctttccgttGCCACGGCCGGGGCCGTGGCAACGGAAAGGGCAGGAGCTCAGGCGCCGTCGGTGAATGCGTCGCGGCGGTCGGTGGTCCTGGCGCCGTCAGTGAACGGGTCGGCCTTGCCCAg                    <  1:651207‑M1/113‑1 (MQ=255)                                                                                                                     aGGGCGCTGGCGGGCCGCCACGGCCCCGGCCGTGGCAACGGAAAGGGCAGGAGCTCAGGCGCCGTCGGTGAATGCGTCGCGGCGGTCGGTGGTCCTg                                                    <  1:102783/97‑1 (MQ=255)                                                                                                                     aGGGCGCTGGCGGGCCGCCACGGCCCCGGCCGTGGCAACGGAAAGGGCAGGAGCTCAGGCGCCGTCGGTGAATGCGTCGCGGCGGTCGGTGGTCCTg                                                    >  2:102783/1‑97 (MQ=255)                                                                                                                        gcgcTGGCGGGCCGCCACGGCCGGGGCCGTGGCAACGGAAAGGGCAGGAGCTCAGGCGCCGTCGGTGAATGCGTCGCGGCGGTCGGTGGTCCTGGCGCCGTCAGTGAACGGGTCGGCCTTGCCCAGCCTGgcgc            <  1:943091/134‑1 (MQ=255)                                                                                                                            ctttccgttGCCACGGCCGGGGCCGTGGCAACGGAAAGGGCAGGAGCTCAGGCGCCGTCGGTGAATGCGTCGCGGCGGTCGGTGGTCCTGGCGCCGTCAGTGAACGGGTCGGCCTTGCCCAGCCTGGCgccgcc        <  1:5076‑M1/125‑1 (MQ=255)                                                                                                                               cGGGCCGCCACGGCCGGGGCCGTGGCAACGGAAAGGGCAGGAGCTCAGGCGCCGTCGGTGAATGCGTCGCGGCGGTCGGTGGTCCTGGCGCCGTCAGTGAACGGGTCGGCCTTGCCCAGCCTgg               <  2:1021693/124‑1 (MQ=255)                                                                                                                               cGGGCCGCCACGGCCGGGGCCGTGGCAACGGAAAGGGCAGGAGCTCAGGCGCCGTCGGTGAATGCGTCGCGGCGGTCGGTGGTCCTGGCGCCGTCAGTGAACGGGTCGGCCTTGCCCAGCCTgg               >  1:1021693/1‑124 (MQ=255)                                                                                                                                  gttGCCACGGCCGGGGCCGTGGCAACGGAAAGGGCAGGAGCTCAGGCGCCGTCGGTGAATGCGTCGCGGCGGTCGGTGGTCCTGGCGCCGTCAGTGAACGGGTCGGCCTTGCCCAGCCTGGCGCCGCCCAGGaa  >  2:5076‑M1/4‑134 (MQ=255)                                                                                                                                     |                                                                                                                                   GCGATCGAATCGATGATGGTGTCCGAGCTGGAGCCCGAGGCGGGCCTGGACGGGGGGATGGGGGCGGAAGCAGCCGCGAGCGGGCAGGCTGAAGGAGCGGCCCGCACGGCGGGTTGAGGGCGCTGGCGGGCCGCCACGGCCGGGGCCGTGGCAACGGAAAGGGCAGGAGCTCAGGCGCCGTCGGTGAATGCGTCGCGGCGGTCGGTGGTCCTGGCGCCGTCAGTGAACGGGTCGGCCTTGCCCAGCCTGGCGCCGCCCAGGAA  >  AM260480/194582‑194844

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.