| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 251597 = | 9 (0.290) | 3 (0.110) | 3/190 | 2.5 | 21.3% | coding (497/1023 nt) | h16_B0225 | Integrase/recombinase protein |
| ? | AM260480 | 251666 = | 14 (0.500) | coding (566/1023 nt) | h16_B0225 | Integrase/recombinase protein | |||||
CCGTTGTCCGCGCGGACCATGCGCAGCGCCATCCGGCCGGGGGCGCCGGCTTCGATGGCATCGACCCGCAGCGCCCGCGCTTCGCCTACCTTCAGGCCGCCGCCGAGCAGCACCGCCAGCAGGGCCACATCGCGGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260480/251735‑251597‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgggcgcTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGCCGAGCCTATACCGTGCCGCTGTTCAGCCTGGCCCATGCGCCGC > AM260480/251666‑251779 CCGTTGTCCGCGCGGACCATGCGCAGCGCCATCCGGCCGGGGGCGCCGGCTTCGATGGCATCGACCCGCAGCGCCCGCGCTTCGCCTACCTTCAGGCCGCCGCCGAGCAGCACCGCCAGCAGGGCCACATCGCG < 2:867406/134‑1 GTTGTCCGCGCGGACCATGCGCAGCGCCATCCGGCCGGGGGCGCCGGCTTCGATGGCATCGACCCGCAGCGCCCGCGCTTCGCCTACCTTCAGGCCGCCGCCGAGCAGCACCGCCAGCAGGGCCACATCGCGGG < 1:20478/134‑1 TTGTCCGCGCGGACCATGCGCAGCGCCATCCGGCCGGGGGCGCCGGCTTCGATGGCATCGACCCGCAGCGCCCGCGCTTCGCCTACCTTCAGGCCGCCGCCGAGCAGCACCGCCAGCAGGGCCACATCGCGGGC > 1:1116447/1‑134 TTGTCCGCGCGGACCATGCGCAGCGCCATCCGGCCGGGGGCGCCGGCTTCGATGGCATCGACCCGCAGCGCCCGCGCTTCGCCTACCTTCAGGCCGCCGCCGAGCAGCACCGCCAGCAGGGCCACATCG < 1:1148506/129‑1 TTGTCCGCGCGGACCATGCGCAGCGCCATCCGGCCGGGGGCGCCGGCTTCGATGGCATCGACCCGCAGCGCCCGCGCTTCGCCTACCTTCAGGCCGCCGCCGAGCAGCACCGCCAGCAGGGCCACATCG > 2:1148506/1‑129 CATCCGGCCGGGGGCGCCGGCTTCGATGGCATCGACCCGCAGCGCCCGCGCTTCGCCTACCTTCAGGCCGCCGCCGAGCAGCACCGCCAGCAGGGCCACATCGCGGGC > 1:172994/1‑108 CATCCGGCCGGGGGCGCCGGCTTCGATGGCATCGACCCGCAGCGCCCGCGCTTCGCCTACCTTCAGGCCGCCGCCGAGCAGCACCGCCAGCAGGGCCACATCGCGGGC < 2:172994/108‑1 CTTCGATGGCATCGACCCGCAGCGCCCGCGCTTCGCCTACCTTCAGGCCGCCGCCGAGCAGCACCGCCAGCAGGGCCACATCGCGGG < 1:752438/87‑1 CTTCGATGGCATCGACCCGCAGCGCCCGCGCTTCGCCTACCTTCAGGCCGCCGCCGAGCAGCACCGCCAGCAGGGCCACATCGCGGG > 2:752438/1‑87 TCGCCTACCTTCAGGCCGCCGCCGAGCAGCACCGCCAGCAGGGCCACATCGCGGG < 1:593457/55‑1 TCGCCTACCTTCAGGCCGCCGCCGAGCAGCACCGCCAGCAGGGCCACATCGCGGG > 2:593457/1‑55 CGCCGCCGAGCAGCACCGCCAGCAGGGCCACATCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCC > 1:93204/1‑72 CGCCGCCGAGCAGCACCGCCAGCAGGGCCACATCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCC < 2:93204/72‑1 CAGGGCCACATCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGCCGAGCCTATACCGTGCCGCTGTTCAGCCTGGCCCATGCGCCGC > 1:727667/1‑134 CTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAA < 1:793658/68‑1 CTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAA > 2:793658/1‑68 CCGTTGTCCGCGCGGACCATGCGCAGCGCCATCCGGCCGGGGGCGCCGGCTTCGATGGCATCGACCCGCAGCGCCCGCGCTTCGCCTACCTTCAGGCCGCCGCCGAGCAGCACCGCCAGCAGGGCCACATCGCGGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260480/251735‑251597‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgggcgcTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGCCGAGCCTATACCGTGCCGCTGTTCAGCCTGGCCCATGCGCCGC > AM260480/251666‑251779 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |