| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 251597 = | 9 (0.290) | 3 (0.110) | 3/190 | 2.5 | 21.3% | coding (497/1023 nt) | h16_B0225 | Integrase/recombinase protein |
| ? | AM260480 | 251666 = | 14 (0.500) | coding (566/1023 nt) | h16_B0225 | Integrase/recombinase protein | |||||
GAACGATCCCACCGCGTTCCTGCTGCCGGGCGAGCGCGACCTGCTGGTGGCGCGGATACTTGGCCCGGCCGGCATGCCGGCCGGCGACACGCGCACCGCGGCATCGCCCACCCAATGGAAGCGCGCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCC > AM260480/251475‑251695 | gaACGATCCCACCGCGTTCCTGCTGCCGGGCGAGCGCGACCTGCTGGTGGCGCGGATACTTGGCCCGGCCGGCATGCCGGCCGGCGACACGCGCACCGCGGCATCGCCCACCCAATGGAAGCGCGCCCGCGAtg > 2:1116447/1‑134 (MQ=255) gcggcgcatgggccaggctgaacagcggcacggtataggctcggccgttgtccgcgcggaccatgcgcagcgccatccggccgggggcgccggcttcgatggcatcgacccgcaGCGCCCGCGATGTGGCCctg > 1:727667‑M1/115‑134 (MQ=255) gCGAGCGCGACCTGCTGGTGGCGCGGATACTTGGCCCGGCCGGCATGCCGGCCGGCGACACGCGCACCGCGGCATCGCCCACCCAATGGAAGCGCGCCCGCGAtgt > 1:1049646/1‑106 (MQ=255) gCGAGCGCGACCTGCTGGTGGCGCGGATACTTGGCCCGGCCGGCATGCCGGCCGGCGACACGCGCACCGCGGCATCGCCCACCCAATGGAAGCGCGCCCGCGAtgt < 2:1049646/106‑1 (MQ=255) gACCTGCTGGTGGCGCGGATACTTGGCCCGGCCGGCATGCCGGCCGGCGACACGCGCACCGCGGCATCGCCCACCCAATGGAAGCGCGCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTg > 1:114389/1‑132 (MQ=255) gATACTTGGCCCGGCCGGCATGCCGGCCGGCGACACGCGCACCGCGGCATCGCCCACCCAATGGAAGCGCGCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCggg < 1:1013518/134‑1 (MQ=255) ttgtccgcgcggaccatgcgcagcgccatccggccgggggcgccggcttcgatggcatcgacccgcag < 1:793658‑M1/1‑1 (MQ=255) ttgtccgcgcggaccatgcgcagcgccatccggccgggggcgccggcttcgatggcatcgacccgcag > 2:793658‑M1/68‑68 (MQ=255) tACTTGGCCCGGCCGGCATGCCGGCCGGCGACACGCGCACCGCGGCATCGCCCACCCAATGGAAGCGCGCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGgcg > 2:66136/1‑134 (MQ=255) cggcATGCCGGCCGGCGACACGCGCACCGCGGCATCGCCCACCCAATGGAAGCGCGCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATg > 1:1172521/1‑134 (MQ=255) gcATGCCGGCCGGCGACACGCGCACCGCGGCATCGCCCACCCAATGGAAGCGCGCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGc > 1:300557/1‑133 (MQ=255) cacGCGCACCGCGGCATCGCCCACCCAATGGAAGCGCGCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGccg < 2:1172521/134‑2 (MQ=255) gggcgccggcttcgatggcatcgacccgcaGCGCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTcggcggcg > 1:93204‑M1/31‑72 (MQ=255) gggcgccggcttcgatggcatcgacccgcaGCGCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTcggcggcg < 2:93204‑M1/42‑1 (MQ=255) | GAACGATCCCACCGCGTTCCTGCTGCCGGGCGAGCGCGACCTGCTGGTGGCGCGGATACTTGGCCCGGCCGGCATGCCGGCCGGCGACACGCGCACCGCGGCATCGCCCACCCAATGGAAGCGCGCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCC > AM260480/251475‑251695 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |