New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260480 251597 =9 (0.290)3 (0.110) 3/190 2.5 21.3% coding (497/1023 nt) h16_B0225 Integrase/recombinase protein
?AM260480 251666 = 14 (0.500)coding (566/1023 nt) h16_B0225 Integrase/recombinase protein

CGGCATGCCGGCCGGCGACACGCGCACCGCGGCATCGCCCACCCAATGGAAGCGCGCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGCCGAGCCTATACCGTGCCGCTGTTCAGCCTGGCCCATGCGCCGC  >  AM260480/251544‑251779
                                                                                                                          |                                                                                                                 
cggcATGCCGGCCGGCGACACGCGCACCGCGGCATCGCCCACCCAATGGAAGCGCGCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATg                                                                                                        >  1:1172521/1‑134 (MQ=255)
  gcATGCCGGCCGGCGACACGCGCACCGCGGCATCGCCCACCCAATGGAAGCGCGCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGc                                                                                                       >  1:300557/1‑133 (MQ=255)
                  cacGCGCACCGCGGCATCGCCCACCCAATGGAAGCGCGCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGccg                                                                                      <  2:1172521/134‑2 (MQ=255)
                                                       GCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATg                                                                           >  1:172994‑M1/1‑108 (MQ=255)
                                                       GCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATg                                                                           <  2:172994‑M1/108‑1 (MQ=255)
                                                       GCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa                                                 >  1:1116447‑M1/1‑134 (MQ=255)
                                                        CCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAg                                                                                               >  2:752438‑M1/1‑87 (MQ=255)
                                                        CCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAg                                                                                               <  1:752438‑M1/87‑1 (MQ=255)
                                                        CCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAAc                                                <  1:20478‑M1/134‑1 (MQ=255)
                                                          CGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACgg                                              <  2:867406‑M1/134‑1 (MQ=255)
                                                            CGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa                                                 <  1:1148506‑M1/129‑1 (MQ=255)
                                                            CGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa                                                 >  2:1148506‑M1/1‑129 (MQ=255)
                                                                             cGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGCCGAGCCTATACCGTGCCg                           >  2:972201/1‑134 (MQ=255)
                                                                              ggTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGCCGAGCCTATACCGTGCCGc                          <  1:972201/134‑1 (MQ=255)
                                                                                cgccgccgagcagcaccgccagcagggccacatcgcgggcgcTGCGGGTCGATGCCATCGAAGCCGGCGccc                                                                                      >  1:93204‑M2/43‑72 (MQ=255)
                                                                                cgccgccgagcagcaccgccagcagggccacatcgcgggcgcTGCGGGTCGATGCCATCGAAGCCGGCGccc                                                                                      <  2:93204‑M2/30‑1 (MQ=255)
                                                                                       cggcggcggCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGCCGAGCCTATACCGTGCCGCTGTTCAGcc                 >  1:918056/1‑134 (MQ=255)
                                                                                         gcggcggcCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa                                                 <  2:1106324/100‑1 (MQ=255)
                                                                                         gcggcggcCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa                                                 >  1:1106324/1‑100 (MQ=255)
                                                                                          cggcggcCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGCCGAGCCTATACCGTGCCGCTGTTCAGCCTgg              >  2:519202/1‑134 (MQ=255)
                                                                                               gcCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGCCGAGCCTATACCGTGCCGCTGTTCAGCCTGGCCCAt         <  1:867406/134‑1 (MQ=255)
                                                                                                      cagggccacatcgcgggcgcTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGCCGAGCCTATACCGTGCCGCTGTTCAGCCTGGCCCATGcgccgc  >  1:727667‑M2/21‑134 (MQ=255)
                                                                                                             gAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa                                                 >  1:886293/1‑80 (MQ=255)
                                                                                                             gAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa                                                 <  2:886293/80‑1 (MQ=255)
                                                                                                              aaGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGcc                                            <  2:322960/84‑1 (MQ=255)
                                                                                                              aaGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGAGGGCGCTGCGCATGGTCCGCGCGGACAACGGcc                                            >  1:322960/1‑84 (MQ=255)
                                                                                                                         cTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa                                                 <  1:793658‑M2/67‑1 (MQ=255)
                                                                                                                         cTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa                                                 >  2:793658‑M2/2‑68 (MQ=255)
                                                                                                                          |                                                                                                                 
CGGCATGCCGGCCGGCGACACGCGCACCGCGGCATCGCCCACCCAATGGAAGCGCGCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGCCGAGCCTATACCGTGCCGCTGTTCAGCCTGGCCCATGCGCCGC  >  AM260480/251544‑251779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.