| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 251597 = | 9 (0.290) | 3 (0.110) | 3/190 | 2.5 | 21.3% | coding (497/1023 nt) | h16_B0225 | Integrase/recombinase protein |
| ? | AM260480 | 251666 = | 14 (0.500) | coding (566/1023 nt) | h16_B0225 | Integrase/recombinase protein | |||||
CGGCATGCCGGCCGGCGACACGCGCACCGCGGCATCGCCCACCCAATGGAAGCGCGCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGCCGAGCCTATACCGTGCCGCTGTTCAGCCTGGCCCATGCGCCGC > AM260480/251544‑251779 | cggcATGCCGGCCGGCGACACGCGCACCGCGGCATCGCCCACCCAATGGAAGCGCGCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATg > 1:1172521/1‑134 (MQ=255) gcATGCCGGCCGGCGACACGCGCACCGCGGCATCGCCCACCCAATGGAAGCGCGCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGc > 1:300557/1‑133 (MQ=255) cacGCGCACCGCGGCATCGCCCACCCAATGGAAGCGCGCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGccg < 2:1172521/134‑2 (MQ=255) GCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATg > 1:172994‑M1/1‑108 (MQ=255) GCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATg < 2:172994‑M1/108‑1 (MQ=255) GCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa > 1:1116447‑M1/1‑134 (MQ=255) CCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAg > 2:752438‑M1/1‑87 (MQ=255) CCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAg < 1:752438‑M1/87‑1 (MQ=255) CCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAAc < 1:20478‑M1/134‑1 (MQ=255) CGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACgg < 2:867406‑M1/134‑1 (MQ=255) CGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa < 1:1148506‑M1/129‑1 (MQ=255) CGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa > 2:1148506‑M1/1‑129 (MQ=255) cGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGCCGAGCCTATACCGTGCCg > 2:972201/1‑134 (MQ=255) ggTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGCCGAGCCTATACCGTGCCGc < 1:972201/134‑1 (MQ=255) cgccgccgagcagcaccgccagcagggccacatcgcgggcgcTGCGGGTCGATGCCATCGAAGCCGGCGccc > 1:93204‑M2/43‑72 (MQ=255) cgccgccgagcagcaccgccagcagggccacatcgcgggcgcTGCGGGTCGATGCCATCGAAGCCGGCGccc < 2:93204‑M2/30‑1 (MQ=255) cggcggcggCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGCCGAGCCTATACCGTGCCGCTGTTCAGcc > 1:918056/1‑134 (MQ=255) gcggcggcCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa < 2:1106324/100‑1 (MQ=255) gcggcggcCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa > 1:1106324/1‑100 (MQ=255) cggcggcCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGCCGAGCCTATACCGTGCCGCTGTTCAGCCTgg > 2:519202/1‑134 (MQ=255) gcCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGCCGAGCCTATACCGTGCCGCTGTTCAGCCTGGCCCAt < 1:867406/134‑1 (MQ=255) cagggccacatcgcgggcgcTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGCCGAGCCTATACCGTGCCGCTGTTCAGCCTGGCCCATGcgccgc > 1:727667‑M2/21‑134 (MQ=255) gAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa > 1:886293/1‑80 (MQ=255) gAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa < 2:886293/80‑1 (MQ=255) aaGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGcc < 2:322960/84‑1 (MQ=255) aaGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGAGGGCGCTGCGCATGGTCCGCGCGGACAACGGcc > 1:322960/1‑84 (MQ=255) cTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa < 1:793658‑M2/67‑1 (MQ=255) cTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa > 2:793658‑M2/2‑68 (MQ=255) | CGGCATGCCGGCCGGCGACACGCGCACCGCGGCATCGCCCACCCAATGGAAGCGCGCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGCCGAGCCTATACCGTGCCGCTGTTCAGCCTGGCCCATGCGCCGC > AM260480/251544‑251779 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |