New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	2232748 =	10 (0.330)	3 (0.110)	3/194	2.6	29.5%	intergenic (‑318/‑51)	h16_B1975/h16_B1976	transcriptional regulator, IclR‑family/outer membrane receptor, TonB dependent
	?	AM260480	2232791 =	5 (0.180)					intergenic (‑361/‑8)	h16_B1975/h16_B1976	transcriptional regulator, IclR‑family/outer membrane receptor, TonB dependent

GAGCAGGTCACGCGTAATGACGGTGATCGACTGCGCGGCGTCGGCCGCTGATTGATCCGACTTGGTCACTCCGGCCGGCCGCCGCGTGCTGAAGCCTACGTCAGTTTGCCCGTCGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/2232867‑2232748 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcggcCGGCCGGAGTGACCAAGTCGGATCAATCAGCGGCCGACGCCGCGCAGTCGATCACCGTCATTACGCGTGACCTGCTCGACAGCCAGCAGGCACAGAACCTCAGCGACGCGCTGCAGAACTCAGCCGGCG  >  AM260480/2232791‑2232919                                                                                                                                                                                                                                                           GAGCAGGTCACGCGTAATGACGGTGATCGACTGCGCGGCGTCGGCCGCTGATTGATCCGACTTGGTCACTCCGGCCGGCCGCCGCGTGCTGAAGCCTACGTCAGTTTGCCCGTCGGCGGCCGGCCGGAGTGAC                                                                                                                      <  1:1144091/133‑1                          ATCGACTGCGCGGCGTCGGCCGCTGATTGATCCGACTTGGTCACTCCGGCCGGCCGCCGCGTGCTGAAGCCTACGTCAGTTTGCCCGTCGGCGGCCGGCCGGAGTGACCAAGTCGGATCA                                                                                                          <  1:388605/120‑1                          ATCGACTGCGCGGCGTCGGCCGCTGATTGATCCGACTTGGTCACTCCGGCCGGCCGCCGCGTGCTGAAGCCTACGTCAGTTTGCCCGTCGGCGGCCGGCCGGAGTGACCAAGTCGGATCA                                                                                                          >  2:388605/1‑120                                                                                                                     CGGCCGGCCGGAGTGACCAAGTCGGATCAATCAGCGGCCGACGCCGCGCAGTCGATCACCGTCATTACGCGTGACCTGCTCGACAGCCAGCAGGCACAGAACCTCAGCGACGCGCTGCAGAACTCAGCCGGCG  <  1:521597/133‑1                                                                                                                     CGGCCGGCCGGAGTGACCAAGTCGGATCAATCAGCGGCCGACGCCGCGCAGTCGATCACCGTCATTACGCGTGACCTGCTCGACAGCCAGCAGGCACAGAACCTCAGCGACGCGCTGCAGAACTCAGCCGGCG  >  2:521597/1‑133                                                                                                                                                                                                                                                           GAGCAGGTCACGCGTAATGACGGTGATCGACTGCGCGGCGTCGGCCGCTGATTGATCCGACTTGGTCACTCCGGCCGGCCGCCGCGTGCTGAAGCCTACGTCAGTTTGCCCGTCGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/2232867‑2232748 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcggcCGGCCGGAGTGACCAAGTCGGATCAATCAGCGGCCGACGCCGCGCAGTCGATCACCGTCATTACGCGTGACCTGCTCGACAGCCAGCAGGCACAGAACCTCAGCGACGCGCTGCAGAACTCAGCCGGCG  >  AM260480/2232791‑2232919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.