| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 2232748 = | 10 (0.330) | 3 (0.110) | 3/194 | 2.6 | 29.5% | intergenic (‑318/‑51) | h16_B1975/h16_B1976 | transcriptional regulator, IclR‑family/outer membrane receptor, TonB dependent |
| ? | AM260480 | 2232791 = | 5 (0.180) | intergenic (‑361/‑8) | h16_B1975/h16_B1976 | transcriptional regulator, IclR‑family/outer membrane receptor, TonB dependent | |||||
TTTTCACCTTGCGCCCTCATGCTTGTCCGCCGTCTTGCCATACCCGCCGCCGTCAGTTGCCTGTTCCTGCCTTCCGTTGTTTCCCACGCCGCCGAAGATCTCAGCACGCTGCCATCCGTGACGGTCAGCGCCGCCGCCGACGGGCAAACTGACGTAGGCTTCAGCACGCGGCGGCCGGCCGGAGTGACCAAGTCGGATCAATCAGCGGCCGACGCCGCGCAGTCGATCACCGTCATTACGCGTGACCTGCTC > AM260480/2232616‑2232867 | ttttCACCTTGCGCCCTCATGCTTGTCCGCCGTCTTGCTATACCCGCCGCCGTCAGTTGCCTGTTCCTGCCTTCCGTTGTTTCCCACGCCGCCGAAGATCTCAGCACGCTGCCATCCGTGACGGTCAGcgccgc < 2:916594/134‑1 (MQ=255) cgccggctgagttctgcagcgcgtcgctgaggttctgtgcctgctggctgtcgagcaggtcacgcgtaatgacggtgatcgactgcgcggcgtcggccgctgattgatccgacttggtcactccggccggccg < 1:521597‑M1/4‑1 (MQ=255) cgccggctgagttctgcagcgcgtcgctgaggttctgtgcctgctggctgtcgagcaggtcacgcgtaatgacggtgatcgactgcgcggcgtcggccgctgattgatccgacttggtcactccggccggccg > 2:521597‑M1/130‑133 (MQ=255) aTGCTTGTCCGCCGTCTTGCCATACCCGCCGCCGTCAGTTGCCTGTTCCTGCCTTCCGTTGTTTCCCACGCCGCCGAAGATCTCAGCACGCTGCCATCCGTGACGGTCAGCGCCGCCGCCGACGGGCAAACTGa < 1:109058/134‑1 (MQ=255) cgTCTTGCCATACCCGCCGCCGTCAGTTGCCTGTTCCTGCCTTCCGTTGTTTCCCACGCCGCCGAAGATCTCAGCACGCTGCCATCCGTGACGGTCAGCGCCGCCGCCGACGGGCAAACTGACGTAGGCTTCAg > 2:1048114/1‑134 (MQ=255) aaccccGCCGCCGTCAGTTGCCTGTTCCTGCCTTCCGTTGTTTCCCACGCCGCCGAAGATCTCAGCACGCTGCCATCCGTGACGGTCAGCGCCGCCGCCGACGGGCAAACTGACGTAGGCTTCAGCACgcggcg > 2:565919/4‑134 (MQ=255) cccGCCGCCGTCAGTTGCCTGTTCCTGCCTTCCGTTGTTTCCCACGCCGCCGAAGATCTCAGCACGCTGCCATCCGTGACGGTCAGCGCCGCCGCCGACGGGCAAACTGACGTAGGCTTCAGCACGCggcggc < 1:1048114/133‑1 (MQ=255) cccACGCCGCCGAAGATCTCAGCACGCTGCCATCCGTGACGGTCAGCGCCGCCGCCGACGGGCAAACTGACGTAGGCTTCAGCACGCGGCGGCCGGCCGGAGTGACCAAGTCGGATCAATCAGCGGCCGAcgc < 1:565919/133‑1 (MQ=255) tgatccgacttggtcactccggccgGCCGCCGACGGGCAAACTGACGTAGGCTTCAGCACGCGGCGGCCGGCCGGAGTGACCAAGTCGGATCAATCAGCGGCCGACGCCGCGCAGTCGAt < 1:388605‑M1/95‑1 (MQ=255) tgatccgacttggtcactccggccgGCCGCCGACGGGCAAACTGACGTAGGCTTCAGCACGCGGCGGCCGGCCGGAGTGACCAAGTCGGATCAATCAGCGGCCGACGCCGCGCAGTCGAt > 2:388605‑M1/26‑120 (MQ=255) aTCCGTGACGGTCAGCGCCGCCGCCGACGGGCAAACTGACGTAGGCTTCAGCACGCGGCGGCCGGCCGGAGTGACCAAGTCGGATCAATCAGCGGCCGAc < 1:333705/100‑1 (MQ=255) aTCCGTGACGGTCAGCGCCGCCGCCGACGGGCAAACTGACGTAGGCTTCAGCACGCGGCGGCCGGCCGGAGTGACCAAGTCGGATCAATCAGCGGCCGAc > 2:333705/1‑100 (MQ=255) gtcactccggccgGCCGCCGACGGGCAAACTGACGTAGGCTTCAGCACGCGGCGGCCGGCCGGAGTGACCAAGTCGGATCAATCAGCGGCCGACGCCGCGCAGTCGATCACCGTCATTACGCGTGACCTGCTc < 1:1144091‑M1/120‑1 (MQ=255) gTCAGCGCCGCCGCCGACGGGCAAACTGACGTAGGCTTCAGCACGCGGCGGCCGGCCGGAGTGACCAAGTCGGATCAATCAGCGGCCGAc < 1:160735/90‑1 (MQ=255) gTCAGCGCCGCCGCCGACGGGCAAACTGACGTAGGCTTCAGCACGCGGCGGCCGGCCGGAGTGACCAAGTCGGATCAATCAGCGGCCGAc > 2:160735/1‑90 (MQ=255) | TTTTCACCTTGCGCCCTCATGCTTGTCCGCCGTCTTGCCATACCCGCCGCCGTCAGTTGCCTGTTCCTGCCTTCCGTTGTTTCCCACGCCGCCGAAGATCTCAGCACGCTGCCATCCGTGACGGTCAGCGCCGCCGCCGACGGGCAAACTGACGTAGGCTTCAGCACGCGGCGGCCGGCCGGAGTGACCAAGTCGGATCAATCAGCGGCCGACGCCGCGCAGTCGATCACCGTCATTACGCGTGACCTGCTC > AM260480/2232616‑2232867 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |