New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	2232748 =	10 (0.330)	3 (0.110)	3/194	2.6	29.5%	intergenic (‑318/‑51)	h16_B1975/h16_B1976	transcriptional regulator, IclR‑family/outer membrane receptor, TonB dependent
	?	AM260480	2232791 =	5 (0.180)					intergenic (‑361/‑8)	h16_B1975/h16_B1976	transcriptional regulator, IclR‑family/outer membrane receptor, TonB dependent

GTTGCCTGTTCCTGCCTTCCGTTGTTTCCCACGCCGCCGAAGATCTCAGCACGCTGCCATCCGTGACGGTCAGCGCCGCCGCCGACGGGCAAACTGACGTAGGCTTCAGCACGCGGCGGCCGGCCGGAGTGACCAAGTCGGATCAATCAGCGGCCGACGCCGCGCAGTCGATCACCGTCATTACGCGTGACCTGCTCGACAGCCAGCAGGCACAGAACCTCAGCGACGCGCTGCAGAACTCAGCCGGCG  >  AM260480/2232671‑2232919                                                                                                                         |                                                                                                                                 gagcaggtcacgcgtaatgacggtgatcgactgcgcggcgtcggccgctgattgatccgacttggtcactccggccggccgccgcgtgctgaagcctacgtcagtttgcccgtcggcggcCGGCCGGAGTGAc                                                                                                                      <  1:1144091‑M2/13‑1 (MQ=255)                          atcgactgcgcggcgtcggccgctgattgatccgacttggtcactccggccggccgccgcgtgctgaagcctacgtcagtttgcccgtcggcggcCGGCCGGAGTGACCAAGTCGGatca                                                                                                          <  1:388605‑M2/25‑1 (MQ=255)                          atcgactgcgcggcgtcggccgctgattgatccgacttggtcactccggccggccgccgcgtgctgaagcctacgtcagtttgcccgtcggcggcCGGCCGGAGTGACCAAGTCGGatca                                                                                                          >  2:388605‑M2/96‑120 (MQ=255)                            cccACGCCGCCGAAGATCTCAGCACGCTGCCATCCGTGACGGTCAGCGCCGCCGCCGACGGGCAAACTGACGTAGGCTTCAGCACGCGGCGGCCGGCCGGAGTGACCAAGTCGGATCAATCAGCGGCCGAcgc                                                                                           <  1:565919/133‑1 (MQ=255)                                                     tgatccgacttggtcactccggccgGCCGCCGACGGGCAAACTGACGTAGGCTTCAGCACGCGGCGGCCGGCCGGAGTGACCAAGTCGGATCAATCAGCGGCCGACGCCGCGCAGTCGAt                                                                               <  1:388605‑M1/95‑1 (MQ=255)                                                     tgatccgacttggtcactccggccgGCCGCCGACGGGCAAACTGACGTAGGCTTCAGCACGCGGCGGCCGGCCGGAGTGACCAAGTCGGATCAATCAGCGGCCGACGCCGCGCAGTCGAt                                                                               >  2:388605‑M1/26‑120 (MQ=255)                                                           aTCCGTGACGGTCAGCGCCGCCGCCGACGGGCAAACTGACGTAGGCTTCAGCACGCGGCGGCCGGCCGGAGTGACCAAGTCGGATCAATCAGCGGCCGAc                                                                                             <  1:333705/100‑1 (MQ=255)                                                           aTCCGTGACGGTCAGCGCCGCCGCCGACGGGCAAACTGACGTAGGCTTCAGCACGCGGCGGCCGGCCGGAGTGACCAAGTCGGATCAATCAGCGGCCGAc                                                                                             >  2:333705/1‑100 (MQ=255)                                                                 gtcactccggccgGCCGCCGACGGGCAAACTGACGTAGGCTTCAGCACGCGGCGGCCGGCCGGAGTGACCAAGTCGGATCAATCAGCGGCCGACGCCGCGCAGTCGATCACCGTCATTACGCGTGACCTGCTc                                                      <  1:1144091‑M1/120‑1 (MQ=255)                                                                     gTCAGCGCCGCCGCCGACGGGCAAACTGACGTAGGCTTCAGCACGCGGCGGCCGGCCGGAGTGACCAAGTCGGATCAATCAGCGGCCGAc                                                                                             <  1:160735/90‑1 (MQ=255)                                                                     gTCAGCGCCGCCGCCGACGGGCAAACTGACGTAGGCTTCAGCACGCGGCGGCCGGCCGGAGTGACCAAGTCGGATCAATCAGCGGCCGAc                                                                                             >  2:160735/1‑90 (MQ=255)                                                                                                                     cggcCGGCCGGAGTGACCAAGTCGGATCAATCAGCGGCCGACGCCGCGCAGTCGATCACCGTCATTACGCGTGACCTGCTCGACAGCCAGCAGGCACAGAACCTCAGCGACGCGCTGCAGAACTCAGCCGGCg  <  1:521597‑M2/129‑1 (MQ=255)                                                                                                                     cggcCGGCCGGAGTGACCAAGTCGGATCAATCAGCGGCCGACGCCGCGCAGTCGATCACCGTCATTACGCGTGACCTGCTCGACAGCCAGCAGGCACAGAACCTCAGCGACGCGCTGCAGAACTCAGCCGGCg  >  2:521597‑M2/5‑133 (MQ=255)                                                                                                                         |                                                                                                                                 GTTGCCTGTTCCTGCCTTCCGTTGTTTCCCACGCCGCCGAAGATCTCAGCACGCTGCCATCCGTGACGGTCAGCGCCGCCGCCGACGGGCAAACTGACGTAGGCTTCAGCACGCGGCGGCCGGCCGGAGTGACCAAGTCGGATCAATCAGCGGCCGACGCCGCGCAGTCGATCACCGTCATTACGCGTGACCTGCTCGACAGCCAGCAGGCACAGAACCTCAGCGACGCGCTGCAGAACTCAGCCGGCG  >  AM260480/2232671‑2232919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.