| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | AY305378 | 84,810 | ISAE1 (+) +8 bp | [hoxW] | [hoxW] | |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AY305378 | 84810 = | 0 (0.000) | 16 (0.870) | 13/208 | 0.4 | 100% | coding (496/498 nt) | hoxW | [NiFe] hydrogenase (HoxH‑specific) C‑terminal protease |
| ? | AY305378 | = 94337 | NA (NA) | noncoding (1313/1313 nt) | ISAE1 | repeat region | |||||
| * | ? | AY305378 | = 84817 | 0 (0.000) | 20 (1.100) | 20/206 | 0.1 | 100% | intergenic (+5/‑18) | hoxW/hoxI | [NiFe] hydrogenase (HoxH‑specific) C‑terminal protease/HoxI |
| ? | AY305378 | 93025 = | NA (NA) | noncoding (1/1313 nt) | ISAE1 | repeat region | |||||
CCCGGCCGATATACTCGCCCAAAGGCGCCTCGTAGATCATCGTTGCGATCCTGTCGATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AY305378/84907‑84810‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAGCGATGCATAGCAAACTGTTTGAAGCAGCCCTT < AY305378/94337‑94245 CCCGGCCGATATACTCGCCCAAAGGCGCCTCGTAGATCATCGTTGCGATCCTGTCGATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCG > 2:29303/1‑134 CTCGCCCAAAGGCGCCTCGTAGATCATCGTTGCGATCCTGTCGATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTC > 1:442801/1‑101 CTCGCCCAAAGGCGCCTCGTAGATCATCGTTGCGATCCTGTCGATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTC < 2:442801/101‑1 CGCCTCGTAGATCATCGTTGCGATCCTGTCGATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAG < 1:29303/134‑1 GATCATCGTTGCGATCCTGTCGATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAGCGATGCAT < 2:121295/133‑1 GATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAGCGATGCATAGCAAACTGTTTGAAGCAGCCC < 2:869102/134‑1 ATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATT < 1:933784/56‑1 ATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATT > 2:933784/1‑56 TTTCCTGCTCTTTCATCGCGTTCTCCTTCTGACTGATTTCAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAGCGATGCATAGCAAACTGTTTGAAGCAGCCCTT < 2:1016681/134‑1 TTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAGCGATGCATAGCAAACTGTTTGAAGCAGCCCTT > 2:1161567/1‑134 TTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAGCGATGCATAG > 1:779967/1‑112 TTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAGCGATGCATAG < 2:779967/112‑1 CAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTA > 1:1117490/1‑49 CAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTA > 1:903728/1‑49 CAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTA < 2:1117490/49‑1 CAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTA < 2:903728/49‑1 CCCGGCCGATATACTCGCCCAAAGGCGCCTCGTAGATCATCGTTGCGATCCTGTCGATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AY305378/84907‑84810‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAGCGATGCATAGCAAACTGTTTGAAGCAGCCCTT < AY305378/94337‑94245 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |