New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 116634 =22 (0.820)6 (0.240) 6/192 1.5 23.9% coding (696/996 nt) h16_A0102 probable extra‑cytoplasmic solute receptor
?AM260479 116673 = 18 (0.730)coding (735/996 nt) h16_A0102 probable extra‑cytoplasmic solute receptor

ACGTTCCCTATCGCGGTTCCACGCCGGCGACCACCGCGCTGCTGGCCGGTGAAACGACTTTCCAGTTCGACAACCTGACCCAGGCCCTGCCGCATATCCGGGCCGGCAAGCTGCGCCCGCTCGCCGTGACGTCGGCACGGCGAATCCCCAGCCTGCCCGAGGTGCCGACCATGGAGGAAACCGGGGTGGGCAACCTCTTGTCGACGGCGTGGATCGGCATCTTTGTGAAAGCCGGCACGCCGCCGGAGATCGCAGCCAGGCTG  >  AM260479/116504‑116766
                                                                                                                                  |                                                                                                                                    
gtccggggcgcgcaggaccgcgaccaggtgctcatgcagcctggctgcgatctccggcggcgtgccggctttcacaaagatgccgatccacgccgtcgacaagaggttgcccaccccggtttcctccatgGTCg                                                                                                                                   <  1:1096936‑M1/4‑1 (MQ=255)
 tccggggcgcgcaggaccgcgaccaggtgctcatgcagcctggctgcgatctccggcggcgtgccggctttcacaaagatgccgatccacgccgtcgacaagaggttgcccaccccggtttcctccatgGTCgg                                                                                                                                  >  1:484199‑M1/130‑134 (MQ=255)
          tCGCGGTTCCACGCCGGCGACCACCGCGCTGCTGGCCGGTGAAACGACTTTCCAGTTCGACAACCTGACCCAGGCCCTGCCGCATATCCGGGCCGGCAAGCTGCGCCCGCTCGCCGTGACGTCGGCACGGCGaa                                                                                                                         <  1:561367/134‑1 (MQ=255)
                ttCCACGCCGGCGACCACCGCGCTGCTGGCCGGTGAAACGACTTTCCAGTTCGACAACCTGACCCAGGCCCTGCCGCATATCCGGGCCGGCAAGCTGCGCCCGCTCGCCGTGACGTCGGCACGGCGAATCCCCa                                                                                                                   <  2:990621/134‑1 (MQ=255)
                            gACCACCGCGCTGCTGGCCGGTGAAACGACTTTCCAGTTCGACAACCTGACCCAGGCCCTGCCGCATATCCGGGCCGGCAAGCTGCGCCCGCTCGCCGTGACGTCGGCACGGCGAATCCCCAGCCTGCCCGAgg                                                                                                       <  1:62448/134‑1 (MQ=255)
                                 ccGCGCTGCTGGCCGGTGAAACGACTTTCCAGTTCGACAACCTGACCCAGGCCCTGCCGCATATCCGGGCCGGCAAGCTGCGCCCGCTCGCCGTGACGTCGGCACGGCGAATCCCCAGCCTGCCCGAGGTGCCg                                                                                                  <  1:1176780/134‑1 (MQ=255)
                                                     aCGACTTTCCAGTTCGACAACCTGACCCAGGCCCTGCCGCATATCCGGGCCGGCAAGCTGCGCCCGCTCGCCGTGACGTCGGCACGGCGAATCCCCAGCCTGCCCGAGGTGCCGACCATGGAGGAAACCGGGGt                                                                              <  2:516444/134‑1 (MQ=255)
                                                               aGTTCGACAACCTGACCCAGGCCCTGCCGCATATCCGGGCCGGCAAGCTGCGCCCGCTCGCCGTGACGTCGGCAc                                                                                                                               <  2:95786/75‑1 (MQ=255)
                                                               aGTTCGACAACCTGACCCAGGCCCTGCCGCATATCCGGGCCGGCAAGCTGCGCCCGCTCGCCGTGACGTCGGCAc                                                                                                                               >  1:95786/1‑75 (MQ=255)
                                                                       aaCCTGACCCAGGCCCTGCCGCATATCCGGGCCGGCAAGCTGCGCCCGCTCGCCGTGACGTCGGCACGGCGAATCCCCAGCCTGCCCGAGGTGCCGACCATGGAGGAAACCGGGGTggg                                                                           >  1:1186673/1‑119 (MQ=255)
                                                                       aaCCTGACCCAGGCCCTGCCGCATATCCGGGCCGGCAAGCTGCGCCCGCTCGCCGTGACGTCGGCACGGCGAATCCCCAGCCTGCCCGAGGTGCCGACCATGGAGGAAACCGGGGTggg                                                                           <  2:1186673/119‑1 (MQ=255)
                                                                                 aGGCCCTGCCGCATATCCGGGCCGGCAAGCTGCGCCCGCTCGCCGTGACGTCGGCACGGCGAATCCCCAGCCTGCCCGAGGTGCCGACCATGGAGGAAACCGGGGTGGGCAACCTCTTGTCGACGGCGTGGATc                                                  >  2:668354/1‑134 (MQ=255)
                                                                                      cTGCCGCATATCCGGGCCGGCAAGCTGCGCCCGCTCGCCGTGACGTCg                                                                                                                                   >  2:973635/1‑48 (MQ=255)
                                                                                      cTGCCGCATATCCGGGCCGGCAAGCTGCGCCCGCTCGCCGTGACGTCg                                                                                                                                   <  1:973635/48‑1 (MQ=255)
                                                                                           gCATATCCGGGCCGGCAAGCTGCGCCCGCTCGCCGTGACGTCGGCACGGCGAATCCCCAGCCTGCCCGAGGTGCCGACCATGGAGGAAACCGGGGTGGGCAACCTCTTGTCGACGGCGTGGATCGGCATCTTtg                                        >  2:413078/1‑134 (MQ=255)
                                                                                             atatCCGGGCCGGCAAGCTGCGCCCGCTCGCCGTGACGTCGGCACGGCGAATCCCCAGCCTGCCCGAGGTGCCGACCATGGAGGAAACCGGGGTGGGCAACCTCTTGTCGACGGCGTGGATCGGCATCTTtgt                                       >  2:767965/1‑133 (MQ=255)
                                                                                             atatCCGGGCCGGCAAGCTGCGCCCGCTCGCCGTGACGTCGGCACGGCGAATCCCCAGCCTGCCCGAGGTGCCGACCATGGAGGAAACCGGGGTGGGCAACCTCTTGTCGACGGCGTGGATCGGCATCTTtgt                                       >  2:1152753/1‑133 (MQ=255)
                                                                                               tcgacaagagcttgcccaccccggtttcctccatgGTCGGCACGGCGAATCCCCAGCCTGCCCGAGGTGCCGACCATGGAGGAAACCGGGGTGGGCAACCTCTTGTCGACGGCGTGGATCGGCATCTTTGTGa                                     <  2:1163568‑M1/98‑1 (MQ=255)
                                                                                                   caagaggttgcccaccccggtttcctccatgGTCGGCACGGCGAATCCCCAGCCTGCCCGAGGTGCCGACCATGGAGGAAACCGGGGTGGGCAACCTCTTGTCGACGGCGTGGATCGGCATCTTTGTGAAAGcc                                >  1:1163568‑M1/32‑134 (MQ=255)
                                                                                                          cAAGCTGCGCCCGCTCGCCGTGACGTCGGCACGGCGAATCCCCAGCCTGCCCGAGGTGCCGACCATGGAGGAAACCGGGGTGGGCAACCTCTTGTCGACGGCGTGGATCGGCATCTTTGTGAAAGCCGGCAcgc                         >  2:811017/1‑134 (MQ=255)
                                                                                                             gCTGCGCCCGCTCGCCGTGACGTCGGCACGGCGAATCCCCAGCCTGCCCGAGGTGCCGACCa                                                                                              <  2:288704/62‑1 (MQ=255)
                                                                                                             gCTGCGCCCGCTCGCCGTGACGTCGGCACGGCGAATCCCCAGCCTGCCCGAGGTGCCGACCa                                                                                              >  1:288704/1‑62 (MQ=255)
                                                                                                                accccggtttcctccatgGTCGGCACGGCGAATCCCCAGCCTGCCCGAGGTGCCGACCATGGAGGAAACCGGGGTGGGCAACCTCTTGTCGACGGCGTGGATCGGCa                                              >  1:913644‑M1/19‑107 (MQ=255)
                                                                                                                accccggtttcctccatgGTCGGCACGGCGAATCCCCAGCCTGCCCGAGGTGCCGACCATGGAGGAAACCGGGGTGGGCAACCTCTTGTCGACGGCGTGGATCGGCa                                              <  2:913644‑M1/89‑1 (MQ=255)
                                                                                                                     cGCTCGCCGTGACGTCGGCACGGCGAATCCCCAGCCTGCCCGAGGTGCCGACCATGGAGGAAACCGGGGTGGGCAACCTCTTGTCGACGGCGTGGATCGGCGTCTTTGTGAAAGcc                                >  2:422657/1‑116 (MQ=255)
                                                                                                                     cGCTCGCCGTGACGTCGGCACGGCGAATCCCCAGCCTGCCCGAGGTGCCGACCATGGAGGAAACCGGGGTGGGCAACCTCTTGTCGACGGCGTGGATCGGCGTCTTTGTGAAAGcc                                <  1:422657/116‑1 (MQ=255)
                                                                                                                           ccGTGACGTCGGCACGGCGAATCCCCAGCCTGCCCGAGGTGCCGACCATGGAGGAAACCGGGGTGGGCAACCTCTTGTCGACGGCGTGGATCGGCATCTTTGTGAAAGCCGGCACGCCGCCGGAGATCGCAGc         >  2:1096936/1‑133 (MQ=255)
                                                                                                                                tgGTCGGCACGGCGAATCCCCAGCCTGCCCGAGGTGCCGACCATGGAGGAAACCGGGGTGGGCAACCTCTTGTCGAc                                                            >  2:640704‑M1/3‑77 (MQ=255)
                                                                                                                                tgGTCGGCACGGCGAATCCCCAGCCTGCCCGAGGTGCCGACCATGGAGGAAACCGGGGTGGGCAACCTCTTGTCGAc                                                            <  1:640704‑M1/75‑1 (MQ=255)
                                                                                                                                 cGTCGGCACGGCGAATCCCCAGCCTGCCCGAGGTGCCGACCATGGAGGAAACCGGGGTGGGCAACCTCTTGTCGACGGCGTGGATCGGCATCTTTGTGAAAGCCGGCACGCCGCCGGAGATCGCAGCCAGGCTg  <  1:413078/134‑1 (MQ=255)
                                                                                                                                  |                                                                                                                                    
ACGTTCCCTATCGCGGTTCCACGCCGGCGACCACCGCGCTGCTGGCCGGTGAAACGACTTTCCAGTTCGACAACCTGACCCAGGCCCTGCCGCATATCCGGGCCGGCAAGCTGCGCCCGCTCGCCGTGACGTCGGCACGGCGAATCCCCAGCCTGCCCGAGGTGCCGACCATGGAGGAAACCGGGGTGGGCAACCTCTTGTCGACGGCGTGGATCGGCATCTTTGTGAAAGCCGGCACGCCGCCGGAGATCGCAGCCAGGCTG  >  AM260479/116504‑116766

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.