| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | 739439 = | 10 (0.370) | 6 (0.240) | 6/192 | 1.5 | 42.5% | coding (925/1086 nt) | h16_A0689 | predicted ornithine cyclodeaminase |
| ? | AM260479 | 739466 = | 7 (0.280) | coding (952/1086 nt) | h16_A0689 | predicted ornithine cyclodeaminase | |||||
GCGCCCGGCCGCGCGGCGGCGGACGAGGTGACCGTGTTCGATTCGGTTGGGTTTGCGCTGGAAGACTACGCCGCGCTGCGCTGGCTCTACACCGCAGCGCAGGCGCACCGGGCGGGCAGGGCGGTTGAGCTGGTGGCGATGCCGCCGGATCCGCGCAACCTGTACGGCTGGATGATGGCGCAGGCCGACGGCGACGAAGCCGGGCTGGCAACGCCGCGGCAGGCGGCAGTGGCCT > AM260479/739364‑739598 | gcgcCCGGCCGCGCGGCGGCGGACGAGGTGACCGTGTTCGATTCGGTTGGGTTTGCGCTGGAAGACTACGCCGCGCTGCGCTGGCTCTACACCGCAGCGCAGGCGCACCGGGCGGGCAGGGCGGTTGAGCtggt > 1:877502/1‑134 (MQ=255) gcCCGGCCGCGCGGCGGCGGACGAGGTGACCGTGTTCGATTCGGTTGGGTTTGCGCTGGAAGACTACGCCGCGCTGCGCTGGCTCTACACCGCAGCGCAGGCGCACCGGGCGGGCAGGGCGGTTGAGCtggtgg < 2:877502/134‑1 (MQ=255) gcggcggACGAGGTGACCGTGTTCGATTCGGTTGGGTTTGCGCTGGAAGACTACGCCGCGCTGCGCTGGCTCTACACCGCAGCGCAGGCGCACCGGGCGGGCAGGGCGGTTGAGCTGGTGGCGATgccgc > 2:335048/1‑130 (MQ=255) gcggcggACGAGGTGACCGTGTTCGATTCGGTTGGGTTTGCGCTGGAAGACTACGCCGCGCTGCGCTGGCTCTACACCGCAGCGCAGGCGCACCGGGCGGGCAGGGCGGTTGAGCTGGTGGCGATgccgc < 1:335048/130‑1 (MQ=255) ggttgcgcggatccggcggcatcgccaccagctcaaccgccctgcccgcccggtgcgcctgcgctgcggtgtagagccagcgcagGCGCa > 2:305159‑M2/86‑90 (MQ=255) ggttgcgcggatccggcggcatcgccaccagctcaaccgccctgcccgcccggtgcgcctgcgctgcggtgtagagccagcgcagGCGCa < 1:305159‑M2/5‑1 (MQ=255) atccggcggcatcgccaccagctcaaccgccctgcccgcccggtgcgcctgcgctgcggtgtagagccagcgcaggc < 2:304857‑M2/2‑1 (MQ=255) atccggcggcatcgccaccagctcaaccgccctgcccgcccggtgcgcctgcgctgcggtgtagagccagcgcaggc > 1:304857‑M2/76‑77 (MQ=255) ttCGATTCGGTTGGGTTTGCGCTGGAAGACTACGCCGCGCTGCGCTGGCTCTACACCGCAGCGCAGGCGCACCGGGCGGGCAGGGCGGTTGAGCTGGTGGCGATGCCGCCGGATCCGCGCAACCTGTACGGCTg > 1:43516/1‑134 (MQ=255) tgcgcCTGCGCTGGCTCTACACCGCAGCGCAGGCGCACCGGGCGGGCAGGGCGGTTGAGCTGGTGGCGATGCCGCCGGATCCGCGCAAcc < 1:305159‑M1/85‑1 (MQ=255) tgcgcCTGCGCTGGCTCTACACCGCAGCGCAGGCGCACCGGGCGGGCAGGGCGGTTGAGCTGGTGGCGATGCCGCCGGATCCGCGCAAcc > 2:305159‑M1/6‑90 (MQ=255) gcCTGCGCTGGCTCTACACCGCAGCGCAGGCGCACCGGGCGGGCAGGGCGGTTGAGCTGGTGGCGATGCCGCCGGAt > 1:304857‑M1/3‑77 (MQ=255) gcCTGCGCTGGCTCTACACCGCAGCGCAGGCGCACCGGGCGGGCAGGGCGGTTGAGCTGGTGGCGATGCCGCCGGAt < 2:304857‑M1/75‑1 (MQ=255) GCGCTGGCTCTACACCGCAGCGCAGGCGCACCGGGCGGGCAGGGCGGTTGAGCTGGTGGCGATgccgc > 2:645904‑M1/1‑68 (MQ=255) GCGCTGGCTCTACACCGCAGCGCAGGCGCACCGGGCGGGCAGGGCGGTTGAGCTGGTGGCGATgccgc < 1:645904‑M1/68‑1 (MQ=255) ctgcggtgtagagccagcgcagGCGCACCGGGCGGGCAGGGCGGTTGAGCTGGTGGCGATgccgc > 1:502777‑M2/23‑65 (MQ=255) ctgcggtgtagagccagcgcagGCGCACCGGGCGGGCAGGGCGGTTGAGCTGGTGGCGATgccgc < 2:502777‑M2/43‑1 (MQ=255) gCTCTACACCGCAGCGCAGGCGCACCGGGCGGGCAGGGCGGTTGAGCTGGTGGCGATGCCGCCGGATCCGCGCAACCTGTACGGCTGGATGATGGCGCAGGCCGACGGCGACGAAGCCGGGCTGGCAAcgccgc < 2:760470/134‑1 (MQ=255) cgcagcgcagGCGCACCGGGCGGGCAGGGCGGTTGAGCTGGTGGCGATGCCGCCGGATCCGCGCAACCTGTACGGCTGGATGATGGCGCAGGCCGACGGGGACGAAGCCGGGCTGGCAACGCCgcggcaggcgg > 1:1076769/1‑134 (MQ=255) cgcagGCGCACCGGGCGGGCAGGGCGGTTGAGCTGGTGGCGATGCCGCCGGATCCGCGCAACCTGTACGGCTGGATGATGGCGCAGGCCGACGGCGACGAAGCCGGGCTGGCAAcgccgc < 1:1070289‑M2/115‑1 (MQ=255) cgcagGCGCACCGGGCGGGCAGGGCGGTTGAGCTGGTGGCGATGCCGCCGGATCCGCGCAACCTGTACGGCTGGATGATGGCGCAGGCCGACGGCGACGAAGCCGGGCTGGCAAcgccgc > 2:1070289‑M2/6‑120 (MQ=255) gcagGCGCACCGGGCGGGCAGGGCGGTTGAGCTGGTGGCGATGCCGCCGGATCcg < 2:1033383‑M2/51‑1 (MQ=255) gcagGCGCACCGGGCGGGCAGGGCGGTTGAGCTGGTGGCGATGCCGCCGGATCcg < 2:35421‑M2/51‑1 (MQ=255) gcagGCGCACCGGGCGGGCAGGGCGGTTGAGCTGGTGGCGATGCCGCCGGATCcg > 1:35421‑M2/5‑55 (MQ=255) gcagGCGCACCGGGCGGGCAGGGCGGTTGAGCTGGTGGCGATGCCGCCGGATCcg > 1:1033383‑M2/5‑55 (MQ=255) gcagGCGCACCGGGCGGGCAGGGCGGTTGAGCTGGTGGCGATGCCGCCGGATCCGCGCAACCTGTACGGCTGGATGATGGCGCAGGCCGACGGGGACGAAGCCGGGCTGGCAACGCCGCGGCAGGCGGCAGTgg < 2:1076769‑M2/130‑1 (MQ=255) cagGCGCACCGGGCGGGCAGGGCTGTTGAGCTGGTGGCGATGCCGCCGGATCCGCGCAACCTGTACGGCTGGATGATGGCGCAGGCCGACGGCGACGAAGCCGGGCTGGCAACGCCGCGGCAGGCGGCAGTGGc > 1:284377‑M2/4‑134 (MQ=255) gGCGCACCGGGCGGGCAGGGCGGTTGAGCTGGTGGCGATGCCGCCGGATCCGCGCAACCTGTACGGCTg > 1:640202‑M2/2‑69 (MQ=255) gGCGCACCGGGCGGGCAGGGCGGTTGAGCTGGTGGCGATGCCGCCGGATCCGCGCAACCTGTACGGCTg < 2:640202‑M2/68‑1 (MQ=255) gGCGCACCGGGCGGGCAGGGCGGTTGAGCTGGTGGCGATGCCGCCGGATCCGCGCAACCTGTACGGCTGGATGATGGCGCAGGCCGACGGCGACGAAGCCGGGCTGGCAACGCCGCGGCAGGCGGCAGTGGCCt > 2:1088916‑M2/2‑134 (MQ=255) | GCGCCCGGCCGCGCGGCGGCGGACGAGGTGACCGTGTTCGATTCGGTTGGGTTTGCGCTGGAAGACTACGCCGCGCTGCGCTGGCTCTACACCGCAGCGCAGGCGCACCGGGCGGGCAGGGCGGTTGAGCTGGTGGCGATGCCGCCGGATCCGCGCAACCTGTACGGCTGGATGATGGCGCAGGCCGACGGCGACGAAGCCGGGCTGGCAACGCCGCGGCAGGCGGCAGTGGCCT > AM260479/739364‑739598 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |