| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 642122 | 27 (1.010) | 6 (0.240) | 6/198 | 1.5 | 18.8% | coding (433/1431 nt) | xseA | Exodeoxyribonuclease VII, large subunit |
| ? | AM260479 | = 642135 | 27 (1.100) | coding (446/1431 nt) | xseA | Exodeoxyribonuclease VII, large subunit | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTGGAGGCAATGCGCCGGGCCGGGCTGGGCAACCTGTACGAAGCCTTCCTGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/642068‑642122‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcgccAGCTTTTCCTTCAGGCGCAGGAAGGCTTCGTACAGGTTGCCCAGCCCGGCCCGGCGCATTGCCTCCACGCCCAACTGCACCTCGCCGCGCGCCTCATACATGGTGACCACGGCGCGCACCTCCA < AM260479/642135‑642012 GTGGAGGCAATGCGCCGGGCCGGGCTGGGCAACCTGTACGAAGCCTTCCTGC > 1:819411/1‑52GTGGAGGCAATGCGCCGGGCCGGGCTGGGCAACCTGTACGAAGCCTTCCTGC < 2:819411/52‑1 AATGCGCCGGGCCGGGCTGGGCAACCTGTACGAAGCCTTCCTGCGCCAGCTTTTCCTTCAGGCGCAGGAAGGCTTCGTACAGGTTGCCCAGCCCGGCCCGGCGCATTGCCTCCACGCCCAACTGCACCT > 1:874179/1‑129 AATGCGCCGGGCCGGGCTGGGCAACCTGTACGAAGCCTTCCTGCGCCAGCTTTTCCTTCAGGCGCAGGAAGGCTTCGTACAGGTTGCCCAGCCCGGCCCGGCGCATTGCCTCCACGCCCAACTGCACCT < 2:874179/129‑1 CGGGCTGGGCAACCTGTACGAAGCCTTCCTGCGCCAGCTTTTCCTTCAGGCGCAGGAAGGCTTCGTACAGGTTGCCCAGCCCGGCCCGGCGCATTGCCTCCACGCCCAACTGCACCTCGCCGCGCGCCTCATA > 1:1038909/1‑133 TTCCTGCGCCAGCTTTTCCTTCAGGCGCAGGAAGGCTTCGTACAGGTTGCCCAGCCCGGCCCGGCGCATTGCCTCCACGCCCAACTGCACCTCGCCGCGCGCCTCATACATGGTGACCACGGCGCGCACCTCCA > 1:69340/1‑134 TCCTGCGCCAGCTTTTCCTTCAGGCGCAGGAAGGCTTCGTACAGGTTGCCCAGCCCGGCCCGGCGCATTGCCTCCACGCCCAACTGCACCTCGCCGCGCGCC < 1:626200/102‑1 TCCTGCGCCAGCTTTTCCTTCAGGCGCAGGAAGGCTTCGTACAGGTTGCCCAGCCCGGCCCGGCGCATTGCCTCCACGCCCAACTGCACCTCGCCGCGCGCC > 2:626200/1‑102 GTGGAGGCAATGCGCCGGGCCGGGCTGGGCAACCTGTACGAAGCCTTCCTGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/642068‑642122‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcgccAGCTTTTCCTTCAGGCGCAGGAAGGCTTCGTACAGGTTGCCCAGCCCGGCCCGGCGCATTGCCTCCACGCCCAACTGCACCTCGCCGCGCGCCTCATACATGGTGACCACGGCGCGCACCTCCA < AM260479/642135‑642012 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |