New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 1033846	23 (0.860)	4 (0.160)	4/204	2.0	17.1%	coding (881/1563 nt)	h16_A0938	ABC‑type transporter, ATPase component: CUT2 family
	?	AM260479	1033877 =	17 (0.670)					coding (850/1563 nt)	h16_A0938	ABC‑type transporter, ATPase component: CUT2 family
Rejected: Frequency below/above cutoff threshold.

CTGGCTTGCCGCCGAGCTGCACCGACATGTTGTCTGCGCGTGTGTCTTCACCGGACAGCGCGGCCAGCAGCTCCTGCTGCCCGTTGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/1033757‑1033846 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggCGTGGACATCCAGCGAGATCCTGCTCAGCTCGGTCGCGAAGGCATGCGCGCGCGGCAGCGACAGGCCCTGCACGCTGAGCCGCAC  >  AM260479/1033877‑1033961                                                                                                                                                                                 CTGGCTTGCCGCCGAGCTGCACCGACATGTTGTCTGCGCGTGTGTCTTCACCGGACAGCGCGGCCAGCAGCTCCTGCTGCCCGTTGCCGG                                                                                       >  1:763232/1‑90 CTGGCTTGCCGCCGAGCTGCACCGACATGTTGTCTGCGCGTGTGTCTTCACCGGACAGCGCGGCCAGCAGCTCCTGCTGCCCGTTGCCGG                                                                                       <  2:763232/90‑1                  TGCACCGACATGTTGTCTGCGCGTGTGTCTTCACCGGACAGCGCGGCCAGCAGCTCCTGCTGCCCGTTGCCGGCGTGGACATCCAGCGAGATCCTGCTCAGCTCGGTCGCGAAGGCATGCGCGCGCGGCAGCGA                          >  1:175446/1‑134                                           TGTCTTCACCGGACAGCGCGGCCAGCAGCTCCTGCTGCCCGTTGCCGGCGTGGACATCCAGCGAGATCCTGCTCAGCTCGGTCGCGAAGGCATGCGCGCGCGGCAGCGACAGGCCCTGCACGCTGAGCCGCAC  <  2:175446/133‑1                                                               GCCAGCAGCTCCTGCTGCCCGTTGCCGGCGTGGACATCCAGCGAGATCCTGC                                                               <  1:665716/52‑1                                                               GCCAGCAGCTCCTGCTGCCCGTTGCCGGCGTGGACATCCAGCGAGATCCTGC                                                               >  2:665716/1‑52                                                                                                                                                                                 CTGGCTTGCCGCCGAGCTGCACCGACATGTTGTCTGCGCGTGTGTCTTCACCGGACAGCGCGGCCAGCAGCTCCTGCTGCCCGTTGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/1033757‑1033846 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggCGTGGACATCCAGCGAGATCCTGCTCAGCTCGGTCGCGAAGGCATGCGCGCGCGGCAGCGACAGGCCCTGCACGCTGAGCCGCAC  >  AM260479/1033877‑1033961

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.