New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 1033846	23 (0.860)	4 (0.160)	4/204	2.0	17.1%	coding (881/1563 nt)	h16_A0938	ABC‑type transporter, ATPase component: CUT2 family
	?	AM260479	1033877 =	17 (0.670)					coding (850/1563 nt)	h16_A0938	ABC‑type transporter, ATPase component: CUT2 family
Rejected: Frequency below/above cutoff threshold.

CCGGCCGACTGGCTTGCCGCCGAGCTGCACCGACATGTTGTCTGCGCGTGTGTCTTCACCGGACAGCGCGGCCAGCAGCTCCTGCTGCCCGTTGCCGGACACGCCGGCAATGCCGACGATCTCGCCGGCGTGGACATCCAGCGAGATCCTGCTCAGCTCGGTCGCGAAGGCATGCGCGCGCGGCAGCGACAGGCCCTGCACGCTGAGCCGCACCGGGCCGCGCTCGGCAGC  >  AM260479/1033749‑1033979                                                                                                                                 |                                                                                                       ccggccgACTGGCTTGCCGCCGAGCTGCACCGACATGTTGTCTGCGCGTGTGTCTTCACCGGACAGCGCGGCCAGCAGCTCCTGCTGCCCGTTGCCGGACACGCCGGCAATGCCGACGATCTCGCCGGCGTGGa                                                                                                   <  1:411112/134‑1 (MQ=255)            gCTTGCCGCCGAGCTGCACCGACATGTTGTCTGCGCGTGTGTCTTCACCGGACAGCGCGGCCAGCAGCTCCTGCTGCCCGTTGCCGGACACGCCGGCAATGCCGACGATCTCGCCGGCGTGGACATCCAGCga                                                                                         <  1:487921/133‑1 (MQ=255)                                  cATGTTGTCTGCGCGTGTGTCTTCACCGGACAGCGCGGCCAGCAGCTCCTGCTGCCCGTTGCCGGACACGCCGGCAATGCCGACGATCTCGCCGGCGTGGACATCCAGCGAGATCCTGc                                                                                 <  1:561944/119‑1 (MQ=255)                                  cATGTTGTCTGCGCGTGTGTCTTCACCGGACAGCGCGGCCAGCAGCTCCTGCTGCCCGTTGCCGGACACGCCGGCAATGCCGACGATCTCGCCGGCGTGGACATCCAGCGAGATCCTGc                                                                                 >  2:561944/1‑119 (MQ=255)                                          cTGCGCGTGTGTCTTCACCGGACAGCGCGGCCAGCAGCTCCTGCTGCCCGTTGCCGGACACGCCGGCAATGCCGACGATCTCGCCGGCGTGGACATCCAGCGAGATCCTGCTCAGCTCGGTCGCGAAGGCATgc                                                          >  1:220968/1‑134 (MQ=255)                                                     tCTTCACCGGACAGCGCGGCCAGCAGCTCCTGCTGCCCGTTGCCGGACACGCCGGCAATGCCGACGATCTCGCCGGCGTGGACATCCAGCGAGATCCTGCTCAGCTCGGTCGCGAAGGCATGCGCGCGCGGCAg                                               <  2:220968/134‑1 (MQ=255)                                                       ttCACCGGACAGCGCGGCCAGCAGCTCCTGCTGCCCGTTGCCGGACACGCCGGCAATGCCGACGATCTCGCCGGCGTGGACATCCAGCga                                                                                         >  1:480161/1‑90 (MQ=255)                                                       ttCACCGGACAGCGCGGCCAGCAGCTCCTGCTGCCCGTTGCCGGACACGCCGGCAATGCCGACGATCTCGCCGGCGTGGACATCCAGCga                                                                                         <  2:480161/90‑1 (MQ=255)                                                        tgcaccgacatgttgtctgcgcgtgtgtcttcaccggacagcgcggccagcagctcctgctgcccgttgccggCGTGGACATCCAGCGAGATCCTGCTCAGCTCGGTCGCGAAGGCATGCGCGCGCGGCAGCGa                                            >  1:175446‑M2/74‑134 (MQ=255)                                                                       gCCAGCAGCTCCTGCTGCCCGTTGCCGGACACGCCGGCAATGCCGACGATCTCGCCGGCGTGGa                                                                                                   <  1:30201/64‑1 (MQ=255)                                                                       gCCAGCAGCTCCTGCTGCCCGTTGCCGGACACGCCGGCAATGCCGACGATCTCGCCGGCGTGGa                                                                                                   >  2:30201/1‑64 (MQ=255)                                                                       gCCAGCAGCTCCTGCTGCCCGTTGCCGGACACGCCGGCAATGCCGACGATCTCGCCGGCGTGGACATCCAGCGAGATCCTGCTCAGCTCGGTCGCGAAGGCa                                                             <  1:558200/102‑1 (MQ=255)                                                                       gCCAGCAGCTCCTGCTGCCCGTTGCCGGACACGCCGGCAATGCCGACGATCTCGCCGGCGTGGACATCCAGCGAGATCCTGCTCAGCTCGGTCGCGAAGGCa                                                             >  2:558200/1‑102 (MQ=255)                                                                       gCCAGCAGCTCCTGCTGCCCGTTGCCGGACACGCCGGCAATGCCGACGATCTCGCCGGCGTGGACATCCAGCGAGATCCTGCTCAGCTCGGTCGCGAAGGCATgcg                                                         >  1:68416/1‑106 (MQ=255)                                                                       gCCAGCAGCTCCTGCTGCCCGTTGCCGGACACGCCGGCAATGCCGACGATCTCGCCGGCGTGGACATCCAGCGAGATCCTGCTCAGCTCGGTCGCGAAGGCATgcg                                                         <  2:68416/106‑1 (MQ=255)                                                                            cagcTCCTGCTGCCCGTTGCCGGACACGCCGGCAATGCCGACGATCTCGCCGGCGTGGACAt                                                                                                <  1:776836/62‑1 (MQ=255)                                                                            cagcTCCTGCTGCCCGTTGCCGGACACGCCGGCAATGCCGACGATCTCGCCGGCGTGGACAt                                                                                                >  2:776836/1‑62 (MQ=255)                                                                                 tgtcttcaccggacagcgcggccagcagctcctgctgcccgttgccggCGTGGACATCCAGCGAGATCCTGCTCAGCTCGGTCGCGAAGGCATGCGCGCGCGGCAGCGACAGGCCCTGCACGCTGAGCCGCAc                    <  2:175446‑M2/85‑1 (MQ=255)                                                                                                  tccacGCCGGCAATGCCGACGATCTCGCCGGCGTGGACATCCAGCGAGATCCTGCTCAGCTCGATCGCGAAGGCATGCGCGCGCGGCAGCGACAGGCCCTGCACGCTGAGCCGCACCGGGCCGCGCTCGGCAGc  >  1:511261/3‑134 (MQ=255)                                                                                                     gccagcagctcctgctgcccgttgccggCGTGGACATCCAGCGAGATCCTGc                                                                                 <  1:665716‑M2/24‑1 (MQ=255)                                                                                                     gccagcagctcctgctgcccgttgccggCGTGGACATCCAGCGAGATCCTGc                                                                                 >  2:665716‑M2/29‑52 (MQ=255)                                                                                                                                 |                                                                                                       CCGGCCGACTGGCTTGCCGCCGAGCTGCACCGACATGTTGTCTGCGCGTGTGTCTTCACCGGACAGCGCGGCCAGCAGCTCCTGCTGCCCGTTGCCGGACACGCCGGCAATGCCGACGATCTCGCCGGCGTGGACATCCAGCGAGATCCTGCTCAGCTCGGTCGCGAAGGCATGCGCGCGCGGCAGCGACAGGCCCTGCACGCTGAGCCGCACCGGGCCGCGCTCGGCAGC  >  AM260479/1033749‑1033979

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.