New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	2297609 =	19 (0.710)	4 (0.160)	4/200	2.0	16.1%	coding (130/681 nt)	h16_A2111	Ribosomal‑protein‑alanine acetyltransferase
	?	AM260479	2297698 =	24 (0.960)					coding (41/681 nt)	h16_A2111	Ribosomal‑protein‑alanine acetyltransferase
Rejected: Frequency below/above cutoff threshold.

CCTGCGGCTGCGCCAGTGGCGCGAGGCGGACTATGCGCCGTTTGCCGCGCTCAATGCCGACGCGCAGGTGATGCGCTATTTCCCTGCGCCGCTGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/2297706‑2297609 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgcAGCCGCAGGCGTTCGGTCTCGAAGGCGATGC  >  AM260479/2297698‑2297728                                                                                                                                   CCTGCGGCTGCGCCAGTGGCGCGAGGCGGACTATGCGCCGTTTGCCGCGCTCAATGCCGACGCGCAGGTGATGCGCTATTTCCCTGCGCCGCT                                      >  1:290083/1‑93 CCTGCGGCTGCGCCAGTGGCGCGAGGCGGACTATGCGCCGTTTGCCGCGCTCAATGCCGACGCGCAGGTGATGCGCTATTTCCCTGCGCCGCT                                      <  2:290083/93‑1                   GCGCGAGGCGGACTATGCGCCGTTTGCCGCGCTCAATGCCGACGCGCAGGTGATGCGCTATTTCCCTGCGCCGCTGGCGCAGCCGCAGGCGTTCGGTCTCGAAGGCGATGC  >  1:371093/1‑111                   GCGCGAGGCGGACTATGCGCCGTTTGCCGCGCTCAATGCCGACGCGCAGGTGATGCGCTATTTCCCTGCGCCGCTGGCGCAGCCGCAGGCGTTCGGTCTCGAAGGCGATGC  <  2:371093/111‑1                     GCGAGGCGGACTATGCGCCGTTTGCCGCGCTCAATGCCGACGCGCAGGTGATGCGCTATTTCCCTGCGCCGCTGGCGCAGCCGCAGGCGTTCGGTCTCGAAG         >  1:439217/1‑102                     GCGAGGCGGACTATGCGCCGTTTGCCGCGCTCAATGCCGACGCGCAGGTGATGCGCTATTTCCCTGCGCCGCTGGCGCAGCCGCAGGCGTTCGGTCTCGAAG         <  2:439217/102‑1                                                                                                                                   CCTGCGGCTGCGCCAGTGGCGCGAGGCGGACTATGCGCCGTTTGCCGCGCTCAATGCCGACGCGCAGGTGATGCGCTATTTCCCTGCGCCGCTGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/2297706‑2297609 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgcAGCCGCAGGCGTTCGGTCTCGAAGGCGATGC  >  AM260479/2297698‑2297728

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.