New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	2297609 =	19 (0.710)	4 (0.160)	4/200	2.0	16.1%	coding (130/681 nt)	h16_A2111	Ribosomal‑protein‑alanine acetyltransferase
	?	AM260479	2297698 =	24 (0.960)					coding (41/681 nt)	h16_A2111	Ribosomal‑protein‑alanine acetyltransferase
Rejected: Frequency below/above cutoff threshold.

CGCGGTGGGCTCGTGCAGTCCGACAAACCCCAGGAAAACACCGTCCGCCTTGCGCTGCGCCACCCAGACGCCCCATCCCTTCGCTGCGATCAGGCTGCGGCAGTGGTCGGCCAACGCATCGCTTTCAACACGCGCCAGCGGCGCAGGGAAATAGCGCATCACCTGCGCGTCGGCATTGAGCGCGGCAAACGGCGCATAGTCCGCCTCGCGCCACTGGCGCAGCCGCAGGCGTTCGGTCTCGAAGGCGATGCCGTCG  >  AM260479/2297478‑2297733                                                                                                                                    |                                                                                                                             cgcgGTGGGCTCGTGCAGTCCGACAAACCCCAGGAAAACACCGTCCGCCTTGCGCTGCGCCACCCAGACGCCCCATCCCTTCGCTGCGATCAGGCTGCGGCAGTGGTCGGCCAACGCATCGCTTTCAACAcgcg                                                                                                                            <  2:737708/134‑1 (MQ=255)    ggTGGGCTCGTGCAGTCCGACAAACCCCAGGAAAACACCGTCCGCCTTGCGCTGCGCCACCCAGACGCCCCATCCCTTCGCTGCGATCAGGCTGCGGCAGTGGTCGGCCAACGCATCGCTTTCAACACGCGCCa                                                                                                                         <  2:250691/134‑1 (MQ=255)     gTGGGCTCGTGCAGTCCGACAAACCCCAGGAAAACACCGTCCGCCTTGCGCTGCGCCACCCAGACGCCCCATCCCTTCGCTGCGATCAGGCTGCGGCAGTGGTCGGCCAACGCATCGCTTTCAACACGCGCCAg                                                                                                                        >  1:1166/1‑134 (MQ=255)                  gTCCGACAAACCCCAGGAAAACACCGTCCGCCTTGCGCTGCGCCACCCAGACGCCCCATCCCTTCGCTGCGATCAGGCTGCGGCAGTGGTCGGCCAACGCATCGCTTTCAACACGCGCCAGCGGCGCAGGGaaa                                                                                                           >  1:124534/1‑134 (MQ=255)                   tCCGACAAACCCCAGGAAAACACCGTCCGCCTTGCGCTGCGCCACCCAGACGCCCCATCCCTTCGCTGCGATCAGGCTGCGGCAGTGGTCGGCCAACGCATCGCTTTCAACACGCGCCAGCGGCGCAGGGAAAt                                                                                                          <  1:780714/134‑1 (MQ=255)                              ccAGGAAAACACCGTCCGCCTTGCGCTGCGCCACCCAGACGCCCCATCCCTTCGCTGCGATCAGGCTGCGGCAGTGGTCGGCCAACGCATCGCTTTCAACACGCGCCAGCGGCGCAGGGAAATAGCGCATCAcc                                                                                               <  2:124534/134‑1 (MQ=255)                                               gCCTTGCGCTGCGCCACCCAGACGCCCCATCCCTTCGCTGCGATCAGGCTGCGGCAGTGGTCGGCCAACGCATCGCTTTCAACACGCGCCAGCGGCGCAGGGAAATAGCGCATCACCTGCGCGTCGGCATTGAg                                                                              <  2:219287/134‑1 (MQ=255)                                                ccTTGCGCTGCGCCACCCAGACGCCCCATCCCTTCGCTGCGATCAGGCTGCGGCAGTGGTCGGCCAACGCATCGCTTTCAACACGCGCCAgc                                                                                                                       >  2:374044/1‑92 (MQ=255)                                                ccTTGCGCTGCGCCACCCAGACGCCCCATCCCTTCGCTGCGATCAGGCTGCGGCAGTGGTCGGCCAACGCATCGCTTTCAACACGCGCCAgc                                                                                                                       <  1:374044/92‑1 (MQ=255)                                                                                ttCGCTGCGATCAGGCTGCGGCAGTGGTCGGCCAACGCATCGCTTTCAACACGCGCCa                                                                                                                         >  2:628210/1‑58 (MQ=255)                                                                                ttCGCTGCGATCAGGCTGCGGCAGTGGTCGGCCAACGCATCGCTTTCAACACGCGCCa                                                                                                                         <  1:628210/58‑1 (MQ=255)                                                                                     tGCGATCAGGCTGCGGCAGTGGTCGGCCAACGCATCGCTTTCAACACGCGCCAGCGGCGCAGGGAAATAGCGCATCACCTg                                                                                             <  1:399414/81‑1 (MQ=255)                                                                                     tGCGATCAGGCTGCGGCAGTGGTCGGCCAACGCATCGCTTTCAACACGCGCCAGCGGCGCAGGGAAATAGCGCATCACCTg                                                                                             >  2:399414/1‑81 (MQ=255)                                                                                      gCGATCAGGCTGCGGCAGTGGTCGGCCAACGCATCGCTTTCAACACGCGCCAGCGGCGCAGGGAAATAGCGCATCACCTGCGCGTCGGCATTGAGCGCGGCAAACGGCGCATAGTCCGCCTCGCGCCACTGgcg                                       >  1:1017149/1‑134 (MQ=255)                                                                                                     gcatcgccttcgagaccgaacgcctgcggctGCGCCAGCGGCGCAGGGAAATAGCGCATCACCTGCGCGTCGGCATTGAGCGCGGCAAACGGCGCATAGTCCGCCTCgcgc                                               <  2:371093‑M1/80‑1 (MQ=255)                                                                                                     gcatcgccttcgagaccgaacgcctgcggctGCGCCAGCGGCGCAGGGAAATAGCGCATCACCTGCGCGTCGGCATTGAGCGCGGCAAACGGCGCATAGTCCGCCTCgcgc                                               >  1:371093‑M1/32‑111 (MQ=255)                                                                                                            cttcgagaccgaacgcctgcggctGCGCCAGCGGCGCAGGGAAATAGCGCATCACCTGCGCGTCGGCATTGAGCGCGGCAAACGGCGCATAGTCCGCCTcgc                                                 >  1:439217‑M1/25‑102 (MQ=255)                                                                                                            cttcgagaccgaacgcctgcggctGCGCCAGCGGCGCAGGGAAATAGCGCATCACCTGCGCGTCGGCATTGAGCGCGGCAAACGGCGCATAGTCCGCCTcgc                                                 <  2:439217‑M1/78‑1 (MQ=255)                                                                                                            cGGCCAACGCATCGCTTTCAACACGCGCCAGCGGCGCAGGGAAATAGCGCATCACCTGCGCGTCGGCATTGAGCGCGGCAAACGGCGCATAGTCCGCCTCGCGCCACTGGCGCAGCCGCAGGCGTTCGGtctc                  >  2:821677/1‑133 (MQ=255)                                                                                                            cGGCCAACGCATCGCTTTCAACACGCGCCAGCGGCGCAGGGAAATAGCGCATCACCTGCGCGTCGGCATTGAGCGCGGCAAACGGCGCATAGTCCGCCTCGCGCCACTGGCGCAGCCGCAGGCGTTCGGtctc                  >  2:837567/1‑133 (MQ=255)                                                                                                                    gCATCGCTTTCAACACGCGCCAGCGGCGCAGGGAAATAGCGCATCACCTGCGCGTCGGCATTGAGCGCGGCAAACGGCGCATAGTCCGCCTCGCGCCACTGGCGCAGCCGCAGGCGTTCGGTCTCGAAGGCGAt         <  1:821677/134‑1 (MQ=255)                                                                                                                      aTCGCTTTCAACACGCGCCAGCGGCGCAGGGAAATAGCGCATCACCTGCGCGTCGGCATTGAGCGCGGCAAACGGCGCATAGTCCGCCTCGCGCCACTGGCGCAGCCGCAGGCGTTCGGTCTCGAAGGCGATGc       <  2:1166/134‑1 (MQ=255)                                                                                                                             tCAACACGCGCCAGCGGCGCAGGGAAATAGCGCATCACCTGCGCGTCGGCATTGAGCGCGGCAAACGGCGCATAGTCCGCCTCGCGCCACTGGCGCAGCCGCAGGCGTTCGGTCTCGAAGGCGATGCcgtcg  <  2:1017149/132‑1 (MQ=255)                                                                                                                                    |                                                                                                                             CGCGGTGGGCTCGTGCAGTCCGACAAACCCCAGGAAAACACCGTCCGCCTTGCGCTGCGCCACCCAGACGCCCCATCCCTTCGCTGCGATCAGGCTGCGGCAGTGGTCGGCCAACGCATCGCTTTCAACACGCGCCAGCGGCGCAGGGAAATAGCGCATCACCTGCGCGTCGGCATTGAGCGCGGCAAACGGCGCATAGTCCGCCTCGCGCCACTGGCGCAGCCGCAGGCGTTCGGTCTCGAAGGCGATGCCGTCG  >  AM260479/2297478‑2297733

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.